Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QRO24_RS08985 Genome accession   NZ_CP127829
Coordinates   1871581..1871910 (+) Length   109 a.a.
NCBI ID   WP_013746361.1    Uniprot ID   F4HBV2
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866581..1876910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS08970 (QRO24_08920) galU 1867400..1868287 (+) 888 WP_039171168.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QRO24_RS08975 (QRO24_08925) glpT 1868646..1870103 (+) 1458 WP_335799705.1 glycerol-3-phosphate transporter -
  QRO24_RS08980 (QRO24_08930) glpQ 1870294..1871388 (+) 1095 WP_409025631.1 glycerophosphodiester phosphodiesterase -
  QRO24_RS08985 (QRO24_08935) comEA/comE1 1871581..1871910 (+) 330 WP_013746361.1 helix-hairpin-helix domain-containing protein Machinery gene
  QRO24_RS08990 (QRO24_08940) fis 1871992..1872288 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  QRO24_RS08995 (QRO24_08945) dusB 1872317..1873291 (-) 975 WP_335796919.1 tRNA dihydrouridine synthase DusB -
  QRO24_RS09000 (QRO24_08950) - 1873618..1876659 (+) 3042 WP_409025632.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11558.21 Da        Isoelectric Point: 7.2030

>NTDB_id=844375 QRO24_RS08985 WP_013746361.1 1871581..1871910(+) (comEA/comE1) [Gallibacterium anatis strain OH/Ck/12965/20]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=844375 QRO24_RS08985 WP_013746361.1 1871581..1871910(+) (comEA/comE1) [Gallibacterium anatis strain OH/Ck/12965/20]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGCTACAGAAAGGATTGGTCGGCATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HBV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

48.182

100

0.486
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468
  comEA Bacillus subtilis subsp. subtilis str. 168

46.067

81.651

0.376