Detailed information NTG0844336

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: sa230627_RS07980
• Genome accession: NZ_CP143800
• Coordinates: 1652433..1653035 (-)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain sa230627barcode06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1647433..1658035

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
sa230627_RS07960 (sa230627_1531)	yajC	1648929..1649189 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
sa230627_RS07965 (sa230627_1532)	tgt	1649208..1650347 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
sa230627_RS07970 (sa230627_1533)	queA	1650370..1651395 (-)	1026	WP_001019178.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
sa230627_RS07975 (sa230627_1534)	ruvB	1651397..1652401 (-)	1005	WP_001005768.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
sa230627_RS07980 (sa230627_1535)	ruvA	1652433..1653035 (-)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
sa230627_RS07985 (sa230627_1536)	-	1653049..1653504 (-)	456	WP_000368902.1	ACT domain-containing protein	-
sa230627_RS07990 (sa230627_1537)	obgE	1653517..1654809 (-)	1293	WP_000496100.1	GTPase ObgE	-
sa230627_RS07995 (sa230627_1538)	rpmA	1655163..1655447 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
sa230627_RS08000 (sa230627_1539)	-	1655459..1655779 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
sa230627_RS08005 (sa230627_1540)	rplU	1655785..1656093 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
sa230627_RS08010 (sa230627_1541)	mreD	1656329..1656859 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
sa230627_RS08015 (sa230627_1542)	mreC	1656859..1657701 (-)	843	WP_196577045.1	rod shape-determining protein MreC	-
sa230627_RS08020	-	1657901..1658020 (-)	120	WP_000840601.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=844336 sa230627_RS07980 WP_000271547.1 1652433..1653035(-) (ruvA) [Staphylococcus aureus strain sa230627barcode06]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=844336 sa230627_RS07980 WP_000271547.1 1652433..1653035(-) (ruvA) [Staphylococcus aureus strain sa230627barcode06]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425