Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P9963_RS04005 Genome accession   NZ_CP143649
Coordinates   832741..833238 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain CPO506     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 827741..838238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9963_RS03990 (P9963_003990) bfr 827749..828213 (+) 465 WP_003093668.1 bacterioferritin -
  P9963_RS03995 (P9963_003995) uvrA 828285..831122 (-) 2838 WP_003121863.1 excinuclease ABC subunit UvrA Machinery gene
  P9963_RS04000 (P9963_004000) - 831336..832724 (+) 1389 WP_003103910.1 MFS transporter -
  P9963_RS04005 (P9963_004005) ssb 832741..833238 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  P9963_RS04010 (P9963_004010) pchA 833327..834757 (-) 1431 WP_003118152.1 isochorismate synthase PchA -
  P9963_RS04015 (P9963_004015) pchB 834754..835059 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  P9963_RS04020 (P9963_004020) pchC 835059..835814 (-) 756 WP_025297567.1 pyochelin biosynthesis editing thioesterase PchC -
  P9963_RS04025 (P9963_004025) pchD 835811..837454 (-) 1644 WP_015649689.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=844182 P9963_RS04005 WP_003114685.1 832741..833238(+) (ssb) [Pseudomonas aeruginosa strain CPO506]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=844182 P9963_RS04005 WP_003114685.1 832741..833238(+) (ssb) [Pseudomonas aeruginosa strain CPO506]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515