Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QQA13_RS02640 Genome accession   NZ_CP127409
Coordinates   609810..610868 (+) Length   352 a.a.
NCBI ID   WP_108471969.1    Uniprot ID   -
Organism   Rhodanobacter thiooxydans strain C33     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 604810..615868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQA13_RS02625 - 604910..606205 (+) 1296 WP_108471972.1 citrate synthase -
  QQA13_RS02630 - 606277..606948 (-) 672 WP_108471971.1 hypothetical protein -
  QQA13_RS02635 - 607010..609538 (-) 2529 WP_108471970.1 penicillin-binding protein 1A -
  QQA13_RS02640 pilM 609810..610868 (+) 1059 WP_108471969.1 pilus assembly protein PilM Machinery gene
  QQA13_RS02645 - 610868..611578 (+) 711 WP_108471968.1 PilN domain-containing protein -
  QQA13_RS02650 pilO 611575..612234 (+) 660 WP_108471967.1 type 4a pilus biogenesis protein PilO -
  QQA13_RS02655 - 612234..612776 (+) 543 WP_108472013.1 pilus assembly protein PilP -
  QQA13_RS02660 - 612832..614982 (+) 2151 WP_108471966.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37776.32 Da        Isoelectric Point: 4.5116

>NTDB_id=844161 QQA13_RS02640 WP_108471969.1 609810..610868(+) (pilM) [Rhodanobacter thiooxydans strain C33]
MGLFTPKKPALIGVDISSTAVKLLQLSQAGGRYRVEHYAVEPLPPNAVVEKNIVEVEAVGDAIRRALARSGSKLKHAAAA
VAGSAVITRIIPMTGDLSDDDLEGQIQVEANQYIPYPIDEVSLDYEVLGPVRDNPDMNSVLLAASRTENVDMRVAALDLG
GLTAAVIDVEAFAMENAFAMIADQLNVGRDALVAVVDIGATMTTLSVLRNQRTIYSREQVFGGKQLTDEIMRRFGLSYEE
AGRAKRKGGLPESYETEALEPFKESLIQQISRLLQFFFAGSEYSKVDQVVLAGGCASIEGLGPMLEEQLGVPCVVANPLA
RMSLSPRVQAQSLAQDAPALMIAVGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=844161 QQA13_RS02640 WP_108471969.1 609810..610868(+) (pilM) [Rhodanobacter thiooxydans strain C33]
GTGGGGCTCTTTACACCGAAGAAGCCGGCGCTGATTGGTGTCGACATCAGTTCGACTGCCGTCAAGCTGCTGCAGCTAAG
TCAGGCCGGCGGCCGTTACCGCGTTGAGCATTACGCGGTCGAGCCGTTGCCGCCGAATGCCGTGGTCGAGAAGAACATCG
TCGAGGTCGAGGCGGTGGGTGATGCGATCCGTCGCGCGCTGGCCCGCTCGGGCTCCAAGCTCAAGCACGCCGCCGCCGCG
GTGGCCGGGTCGGCCGTGATCACGCGCATCATCCCGATGACCGGGGATCTTTCCGACGACGACCTGGAAGGCCAGATCCA
GGTCGAGGCGAACCAGTACATCCCGTACCCGATCGACGAAGTCAGCCTCGACTACGAGGTGCTCGGTCCGGTCCGCGACA
ACCCCGACATGAACAGCGTGTTGCTGGCAGCCTCGCGCACCGAGAACGTCGACATGCGCGTGGCCGCGCTGGACCTGGGC
GGGCTTACCGCCGCGGTGATCGACGTCGAGGCGTTCGCGATGGAGAACGCCTTCGCGATGATCGCCGACCAGCTCAACGT
GGGACGCGACGCGCTGGTGGCGGTGGTCGACATCGGCGCCACCATGACCACCCTGTCGGTGCTGCGCAACCAGCGCACGA
TCTACTCGCGCGAGCAGGTGTTCGGCGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTTCGGGCTCTCCTACGAGGAA
GCCGGCCGCGCCAAGCGCAAGGGCGGCCTGCCCGAGTCCTACGAGACCGAGGCACTGGAACCGTTCAAGGAATCGCTGAT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTTTGCCGGCAGCGAATACAGCAAGGTCGACCAGGTGGTGCTGGCCGGTG
GCTGCGCCTCGATCGAGGGGTTGGGTCCGATGCTGGAAGAGCAGCTCGGCGTGCCCTGCGTCGTCGCCAATCCGCTGGCC
CGCATGTCGCTGTCGCCACGGGTACAGGCACAGTCGCTGGCGCAGGACGCCCCCGCATTGATGATTGCGGTCGGCCTCGC
CTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.705

100

0.517
  comM Acinetobacter baylyi ADP1

52

99.432

0.517
  pilM Legionella pneumophila strain ERS1305867

43.343

100

0.435