Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QP552_RS16715 Genome accession   NZ_CP127408
Coordinates   3622457..3623515 (-) Length   352 a.a.
NCBI ID   WP_099552984.1    Uniprot ID   -
Organism   Stenotrophomonas sp. 59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3617457..3628515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP552_RS16695 - 3618401..3620368 (-) 1968 WP_111113674.1 type IV pilus secretin PilQ family protein -
  QP552_RS16700 - 3620390..3620893 (-) 504 WP_044571441.1 pilus assembly protein PilP -
  QP552_RS16705 pilO 3620920..3621576 (-) 657 WP_005410857.1 type 4a pilus biogenesis protein PilO -
  QP552_RS16710 - 3621573..3622457 (-) 885 WP_286074097.1 PilN domain-containing protein -
  QP552_RS16715 pilM 3622457..3623515 (-) 1059 WP_099552984.1 pilus assembly protein PilM Machinery gene
  QP552_RS16720 - 3623735..3626158 (+) 2424 WP_345782966.1 penicillin-binding protein 1A -
  QP552_RS16725 - 3626428..3627072 (+) 645 WP_012511978.1 hypothetical protein -
  QP552_RS16730 - 3627196..3627945 (-) 750 WP_286074098.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37713.30 Da        Isoelectric Point: 4.4047

>NTDB_id=844153 QP552_RS16715 WP_099552984.1 3622457..3623515(-) (pilM) [Stenotrophomonas sp. 59]
MGLIPKSQSPLVGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPAELDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAYALVASELPVSSDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAVLGGLPEMVEEQLGVPTVVANPLA
QMTLGPKVNAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=844153 QP552_RS16715 WP_099552984.1 3622457..3623515(-) (pilM) [Stenotrophomonas sp. 59]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTTGTAGGCGTCGACATCAGTTCGACTGCGGTAAAGCTTTTGCAGCTGTC
CCGCAGCGGCAATCGTTTCCGTGTGGAACATTACGCTGTGGAACCTCTTCCGCCGAATGCGGTGGTAGAGAAGAACATCG
TGGAAGTGGAGGCCGTGGGTGAGGCCATCCGCCGTGCGATGAACCGCTCGGGGAGCAAGGCCAAGCTGGCCGCTGCCGCC
GTCGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGAGCTCGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTACCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCCGCGTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCCGCGCTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTACGCCCTGGTCGCCAGTGAGCTGCCGGT
GTCCAGCGACGGCGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACCCTCAATGTCCTGCGCGGTGGCCGTAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTACGGCCTGAGCTACGAGGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGTTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
CCAGCAGATCAGCCGCCTGCTGCAGTTCTTCTATGCCGGCAGCGAGTTCAACCGTGTCGACCACATCGTGCTGGCCGGCG
GCTGCGCCGTGCTGGGTGGCCTGCCGGAGATGGTCGAAGAACAGCTGGGCGTGCCGACCGTGGTCGCCAATCCGCTGGCA
CAGATGACCCTGGGCCCGAAGGTGAACGCGCATGCGCTGGCCCAGGATGCCCCCGCGCTGATGATCGCCACCGGTCTGGC
GCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.136

100

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50

100

0.5
  pilM Legionella pneumophila strain ERS1305867

47.863

99.716

0.477