Detailed information NTG0844081

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: QP436_RS18035
• Genome accession: NZ_CP127404
• Coordinates: 4013815..4014978 (+)
• Length: 387 a.a.
• NCBI ID: WP_049467229.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. As-6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4008815..4019978

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QP436_RS18005	soxR	4008991..4009425 (+)	435	WP_032951587.1	redox-sensitive transcriptional activator SoxR	-
QP436_RS18010	-	4009463..4010065 (-)	603	WP_205405056.1	short chain dehydrogenase	-
QP436_RS18015	-	4010164..4011039 (+)	876	WP_180163775.1	LysR family transcriptional regulator	-
QP436_RS18020	proC	4011095..4011916 (-)	822	WP_205405055.1	pyrroline-5-carboxylate reductase	-
QP436_RS18025	-	4011933..4012610 (-)	678	WP_205405054.1	YggS family pyridoxal phosphate-dependent enzyme	-
QP436_RS18030	pilT	4012698..4013735 (+)	1038	WP_004147099.1	type IV pilus twitching motility protein PilT	Machinery gene
QP436_RS18035	pilU	4013815..4014978 (+)	1164	WP_049467229.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
QP436_RS18040	-	4015121..4016104 (+)	984	WP_099819251.1	aldo/keto reductase	-
QP436_RS18045	-	4016178..4017077 (-)	900	WP_205405053.1	LysR family transcriptional regulator	-
QP436_RS18050	-	4017485..4017697 (+)	213	WP_033830520.1	DUF4287 domain-containing protein	-
QP436_RS18055	-	4018024..4018731 (+)	708	WP_099819252.1	YitT family protein	-
QP436_RS18060	-	4018765..4019310 (-)	546	WP_205405052.1	DNA-3-methyladenine glycosylase I	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 43182.62 Da
• Isoelectric Point: 6.6616

>NTDB_id=844081 QP436_RS18035 WP_049467229.1 4013815..4014978(+) (pilU) [Stenotrophomonas sp. As-6]
MPHWEPAVNTTATTIDFTSFLKLMAHQRASDLFITAGMPPAIKVNGKISPITQTPLTPQQSRDLVLNVMTPAQREEFEKT
HECNFAIGLSGVGRFRVSCFYQRNQVGMVLRRIETRIPTVEELSLPPIIKTLAMTKRGIILFVGATGTGKSTSLAAMIGY
RNQNSTGHIITIEDPIEFVHKHEGCIITQREVGIDTDSWEAALKNTLRQAPDVIMIGEVRTREGMDHAIAFAETGHLVLC
TLHANNANQAMDRIVNFFPEDRRNQLLMDLSLNLKGVVAQQLIPSPDGRSRKVAMEILLGTPLVQDYIRDGEIHKLKELM
KESVQLGMKTFDQSLFELYQAGEISYEDALRYADSQNEVRLRIKLSQGGDARTLSQGLDGVEISEVR

Nucleotide

• Length: 1164 bp

>NTDB_id=844081 QP436_RS18035 WP_049467229.1 4013815..4014978(+) (pilU) [Stenotrophomonas sp. As-6]
ATGCCCCATTGGGAGCCCGCCGTGAACACCACCGCGACCACCATCGATTTCACTTCGTTCCTCAAGCTGATGGCGCACCA
GCGCGCCTCGGACCTGTTCATCACCGCTGGCATGCCGCCGGCGATCAAGGTCAACGGCAAGATCTCGCCGATCACCCAGA
CTCCGCTGACGCCGCAGCAGAGCCGCGACCTGGTGCTGAACGTGATGACGCCGGCGCAGCGCGAGGAATTCGAAAAGACC
CACGAATGCAACTTCGCCATCGGCCTGTCCGGTGTCGGCCGCTTCCGTGTGAGCTGTTTCTACCAGCGCAACCAGGTCGG
CATGGTGCTGCGTCGCATCGAGACGCGCATCCCGACCGTGGAAGAGCTGAGCCTGCCGCCGATCATCAAGACGCTGGCGA
TGACCAAGCGCGGCATCATCCTGTTCGTCGGCGCTACCGGTACCGGTAAATCCACGTCGCTGGCCGCGATGATCGGCTAC
CGCAACCAGAATTCGACCGGGCACATCATCACCATCGAAGACCCGATCGAATTCGTGCACAAGCACGAGGGCTGCATCAT
CACCCAGCGCGAAGTCGGCATCGATACCGACAGCTGGGAAGCCGCGCTGAAGAACACCCTGCGCCAGGCCCCGGACGTGA
TCATGATCGGCGAGGTGCGTACCCGCGAGGGCATGGACCACGCCATCGCCTTCGCTGAAACCGGTCACCTGGTGCTGTGC
ACCCTGCACGCCAACAATGCCAACCAGGCGATGGACCGCATCGTCAACTTCTTCCCGGAAGATCGCCGCAACCAGCTGCT
GATGGATCTGTCGCTGAACCTCAAGGGCGTGGTCGCGCAGCAGTTGATTCCGTCGCCGGATGGCCGCTCGCGCAAGGTCG
CGATGGAGATCCTGCTGGGCACGCCGCTGGTGCAGGACTACATCCGCGACGGCGAGATCCACAAGCTGAAGGAGCTGATG
AAGGAATCGGTCCAGTTGGGCATGAAGACCTTCGACCAGAGCCTGTTCGAGCTGTACCAGGCCGGTGAGATCAGCTACGA
GGACGCACTGCGCTACGCCGATTCGCAGAACGAAGTGCGCCTGCGCATCAAGCTCAGCCAGGGCGGCGATGCCCGCACCC
TGTCGCAGGGGCTGGATGGGGTGGAGATTTCCGAGGTCCGGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (129-283)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	67.575	94.832	0.641
pilU	Acinetobacter baylyi ADP1	64.146	92.248	0.592
pilU	Vibrio cholerae strain A1552	53.371	91.99	0.491
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	42.817	91.731	0.393