Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QQS39_RS16845 Genome accession   NZ_CP127389
Coordinates   3684888..3685415 (+) Length   175 a.a.
NCBI ID   WP_099076296.1    Uniprot ID   -
Organism   Proteus appendicitidis strain HZ0627     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3679888..3690415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS39_RS16840 (QQS39_16840) uvrA 3681802..3684636 (-) 2835 WP_285805006.1 excinuclease ABC subunit UvrA -
  QQS39_RS16845 (QQS39_16845) ssb 3684888..3685415 (+) 528 WP_099076296.1 single-stranded DNA-binding protein SSB1 Machinery gene
  QQS39_RS16850 (QQS39_16850) - 3685889..3686848 (+) 960 WP_285805007.1 XamI family restriction endonuclease -
  QQS39_RS16855 (QQS39_16855) - 3686851..3688413 (+) 1563 WP_285805008.1 N-6 DNA methylase -
  QQS39_RS16860 (QQS39_16860) zur 3688700..3689230 (+) 531 WP_151436251.1 zinc uptake transcriptional repressor Zur -
  QQS39_RS16865 (QQS39_16865) - 3689277..3689570 (-) 294 WP_099076302.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QQS39_RS16870 (QQS39_16870) - 3689560..3689814 (-) 255 WP_023583073.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18847.89 Da        Isoelectric Point: 4.9468

>NTDB_id=843981 QQS39_RS16845 WP_099076296.1 3684888..3685415(+) (ssb) [Proteus appendicitidis strain HZ0627]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGSMQMLGGRGGQDGAPSQGGQGGWGQPQQPQASQQFSGGAQSRPAQQPAAAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=843981 QQS39_RS16845 WP_099076296.1 3684888..3685415(+) (ssb) [Proteus appendicitidis strain HZ0627]
ATGGCGAGCAGAGGCGTAAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTTGCAAACCTGACACTGGCAACATCAGAAAGCTGGCGCGATAAACAAACCGGTGAAATGAAAGAAAAAACCG
AGTGGCACCGTGTGGTAATTTTCGGCAAATTAGCGGAAATTGCGGGCGAATATCTGCGTAAAGGTTCACAAGTGTATATC
GAAGGTCAATTACAAACACGTAAATGGCAAGACCAAAGCGGTCAAGACAGATATAGCACTGAAGTTGTGGTCAATATCGG
TGGCTCCATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATGGCGCACCTTCACAAGGCGGTCAAGGCGGTTGGGGTCAAC
CACAACAACCACAAGCATCACAACAATTTAGCGGTGGCGCACAATCTCGCCCTGCACAACAACCCGCAGCGGCTCCAGCA
CCAAGCAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.973

100

0.771
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.6
  ssb Neisseria meningitidis MC58

48.603

100

0.497
  ssb Neisseria gonorrhoeae MS11

48.603

100

0.497