Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QQS39_RS07140 | Genome accession | NZ_CP127389 |
| Coordinates | 1559050..1559547 (-) | Length | 165 a.a. |
| NCBI ID | WP_285805633.1 | Uniprot ID | - |
| Organism | Proteus appendicitidis strain HZ0627 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1554572..1604547 | 1559050..1559547 | within | 0 |
Gene organization within MGE regions
Location: 1554572..1604547
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QQS39_RS07115 (QQS39_07115) | rluE | 1554572..1555201 (-) | 630 | WP_285805631.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| QQS39_RS07120 (QQS39_07120) | icd | 1555340..1556593 (+) | 1254 | WP_151434827.1 | NADP-dependent isocitrate dehydrogenase | - |
| QQS39_RS07125 (QQS39_07125) | - | 1556714..1557841 (-) | 1128 | WP_196571483.1 | site-specific integrase | - |
| QQS39_RS07130 (QQS39_07130) | - | 1557822..1558064 (-) | 243 | WP_036894694.1 | excisionase | - |
| QQS39_RS07135 (QQS39_07135) | - | 1558157..1558798 (-) | 642 | WP_285805632.1 | hypothetical protein | - |
| QQS39_RS07140 (QQS39_07140) | ssb | 1559050..1559547 (-) | 498 | WP_285805633.1 | single-stranded DNA-binding protein | Machinery gene |
| QQS39_RS07145 (QQS39_07145) | - | 1559540..1560073 (-) | 534 | WP_285805634.1 | HD family hydrolase | - |
| QQS39_RS07150 (QQS39_07150) | - | 1560259..1560753 (+) | 495 | WP_109372913.1 | hypothetical protein | - |
| QQS39_RS07155 (QQS39_07155) | - | 1561126..1561815 (-) | 690 | WP_109850091.1 | helix-turn-helix transcriptional regulator | - |
| QQS39_RS07160 (QQS39_07160) | - | 1561913..1562128 (+) | 216 | WP_206449794.1 | helix-turn-helix transcriptional regulator | - |
| QQS39_RS07165 (QQS39_07165) | - | 1562185..1562643 (+) | 459 | WP_109850089.1 | YmfL family putative regulatory protein | - |
| QQS39_RS07170 (QQS39_07170) | - | 1562732..1562941 (+) | 210 | WP_098943307.1 | hypothetical protein | - |
| QQS39_RS07175 (QQS39_07175) | - | 1562931..1563110 (+) | 180 | WP_099659597.1 | DUF4222 domain-containing protein | - |
| QQS39_RS07180 (QQS39_07180) | - | 1563123..1564214 (+) | 1092 | WP_285805635.1 | replication protein | - |
| QQS39_RS07185 (QQS39_07185) | - | 1564287..1564673 (+) | 387 | WP_285805636.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QQS39_RS07190 (QQS39_07190) | - | 1564691..1564891 (+) | 201 | WP_285805637.1 | hypothetical protein | - |
| QQS39_RS07195 (QQS39_07195) | - | 1564888..1565913 (+) | 1026 | WP_285805638.1 | DUF968 domain-containing protein | - |
| QQS39_RS07200 (QQS39_07200) | - | 1565942..1566337 (+) | 396 | WP_285805639.1 | antiterminator Q family protein | - |
| QQS39_RS07205 (QQS39_07205) | - | 1567312..1567488 (+) | 177 | WP_231310469.1 | hypothetical protein | - |
| QQS39_RS07210 (QQS39_07210) | - | 1567562..1568584 (+) | 1023 | WP_285805640.1 | site-specific DNA-methyltransferase | - |
| QQS39_RS07215 (QQS39_07215) | - | 1568780..1569370 (+) | 591 | WP_109400951.1 | hypothetical protein | - |
| QQS39_RS07220 (QQS39_07220) | - | 1569456..1569668 (-) | 213 | WP_109400952.1 | hypothetical protein | - |
| QQS39_RS07225 (QQS39_07225) | - | 1569809..1570078 (+) | 270 | WP_004250558.1 | hypothetical protein | - |
| QQS39_RS07230 (QQS39_07230) | - | 1570078..1570548 (+) | 471 | WP_285805641.1 | lysozyme | - |
| QQS39_RS07235 (QQS39_07235) | - | 1570530..1570688 (+) | 159 | WP_285805642.1 | hypothetical protein | - |
| QQS39_RS07240 (QQS39_07240) | - | 1570691..1571155 (+) | 465 | WP_285805643.1 | lysis protein | - |
| QQS39_RS07245 (QQS39_07245) | - | 1571702..1572013 (+) | 312 | WP_285805644.1 | hypothetical protein | - |
| QQS39_RS07250 (QQS39_07250) | - | 1572072..1572419 (+) | 348 | WP_285805645.1 | HNH endonuclease signature motif containing protein | - |
| QQS39_RS07255 (QQS39_07255) | - | 1572633..1573103 (+) | 471 | WP_285805646.1 | phage terminase small subunit P27 family | - |
| QQS39_RS07260 (QQS39_07260) | - | 1573107..1574840 (+) | 1734 | WP_285805647.1 | terminase TerL endonuclease subunit | - |
| QQS39_RS07265 (QQS39_07265) | - | 1574850..1575029 (+) | 180 | WP_088495902.1 | hypothetical protein | - |
| QQS39_RS07270 (QQS39_07270) | - | 1575029..1576258 (+) | 1230 | WP_023582514.1 | phage portal protein | - |
| QQS39_RS07275 (QQS39_07275) | - | 1576236..1576880 (+) | 645 | WP_285805881.1 | HK97 family phage prohead protease | - |
| QQS39_RS07280 (QQS39_07280) | - | 1576894..1578102 (+) | 1209 | WP_248620128.1 | phage major capsid protein | - |
| QQS39_RS07285 (QQS39_07285) | - | 1578198..1578506 (+) | 309 | WP_100159853.1 | head-tail connector protein | - |
| QQS39_RS07290 (QQS39_07290) | - | 1578503..1578826 (+) | 324 | WP_248620129.1 | phage head closure protein | - |
| QQS39_RS07295 (QQS39_07295) | - | 1578823..1579263 (+) | 441 | WP_198813431.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QQS39_RS07300 (QQS39_07300) | - | 1579260..1579595 (+) | 336 | WP_161769481.1 | hypothetical protein | - |
| QQS39_RS07305 (QQS39_07305) | - | 1579661..1580128 (+) | 468 | WP_036913331.1 | phage tail tube protein | - |
| QQS39_RS07310 (QQS39_07310) | - | 1580131..1580511 (+) | 381 | WP_088495895.1 | phage tail assembly chaperone | - |
| QQS39_RS07315 (QQS39_07315) | - | 1580553..1580816 (+) | 264 | WP_227335946.1 | DUF4035 domain-containing protein | - |
| QQS39_RS07320 (QQS39_07320) | - | 1580836..1584102 (+) | 3267 | WP_285805648.1 | phage tail tape measure protein | - |
| QQS39_RS07325 (QQS39_07325) | - | 1584105..1584437 (+) | 333 | WP_248620134.1 | phage tail protein | - |
| QQS39_RS07330 (QQS39_07330) | - | 1584431..1585183 (+) | 753 | WP_248620136.1 | phage minor tail protein L | - |
| QQS39_RS07335 (QQS39_07335) | - | 1585189..1585896 (+) | 708 | WP_285805882.1 | C40 family peptidase | - |
| QQS39_RS07340 (QQS39_07340) | - | 1585987..1586487 (+) | 501 | WP_023582500.1 | hypothetical protein | - |
| QQS39_RS07345 (QQS39_07345) | - | 1586544..1587137 (+) | 594 | WP_023582499.1 | tail assembly protein | - |
| QQS39_RS07350 (QQS39_07350) | - | 1587157..1590888 (+) | 3732 | WP_285805649.1 | phage tail protein | - |
| QQS39_RS07355 (QQS39_07355) | - | 1590900..1592639 (+) | 1740 | WP_285805650.1 | hypothetical protein | - |
| QQS39_RS07360 (QQS39_07360) | - | 1592840..1593886 (+) | 1047 | WP_049210459.1 | DUF3800 domain-containing protein | - |
| QQS39_RS07365 (QQS39_07365) | - | 1594841..1595563 (+) | 723 | WP_285805651.1 | hypothetical protein | - |
| QQS39_RS07370 (QQS39_07370) | - | 1596101..1596268 (+) | 168 | Protein_1419 | isocitrate/isopropylmalate family dehydrogenase | - |
| QQS39_RS07375 (QQS39_07375) | tnpA | 1596474..1596929 (+) | 456 | WP_285805652.1 | IS200/IS605 family transposase | - |
| QQS39_RS07380 (QQS39_07380) | - | 1597104..1598235 (-) | 1132 | Protein_1421 | site-specific integrase | - |
| QQS39_RS07385 (QQS39_07385) | - | 1598472..1598993 (+) | 522 | WP_072062621.1 | DUF1440 domain-containing protein | - |
| QQS39_RS07390 (QQS39_07390) | - | 1599143..1599337 (+) | 195 | WP_285805653.1 | hypothetical protein | - |
| QQS39_RS07395 (QQS39_07395) | - | 1599411..1600425 (+) | 1015 | Protein_1424 | site-specific DNA-methyltransferase | - |
| QQS39_RS07400 (QQS39_07400) | - | 1600507..1600863 (+) | 357 | WP_285805654.1 | MmcQ/YjbR family DNA-binding protein | - |
| QQS39_RS07405 (QQS39_07405) | - | 1601149..1601334 (-) | 186 | WP_285805655.1 | hypothetical protein | - |
| QQS39_RS07410 (QQS39_07410) | - | 1601437..1601706 (+) | 270 | WP_151434890.1 | hypothetical protein | - |
| QQS39_RS07415 (QQS39_07415) | - | 1601706..1602176 (+) | 471 | WP_151434891.1 | lysozyme | - |
| QQS39_RS07420 (QQS39_07420) | - | 1602158..1602316 (+) | 159 | WP_285805656.1 | hypothetical protein | - |
| QQS39_RS07425 (QQS39_07425) | - | 1602327..1603151 (+) | 825 | WP_285805657.1 | colicin-like pore-forming protein | - |
| QQS39_RS07430 (QQS39_07430) | - | 1603178..1603513 (-) | 336 | WP_285805658.1 | colicin E1 family microcin immunity protein | - |
| QQS39_RS07435 (QQS39_07435) | - | 1603746..1603889 (+) | 144 | WP_285805913.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 165 a.a. Molecular weight: 18022.52 Da Isoelectric Point: 8.0311
>NTDB_id=843976 QQS39_RS07140 WP_285805633.1 1559050..1559547(-) (ssb) [Proteus appendicitidis strain HZ0627]
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGASKSVGSQPAQQSLPPAQSQAKSNKPPMDFEDDIPFAPIGLMYPHH
LINVI
MANGSVNKVILIGNLGRDPEIRYLPSGGAVANLAVATSEKWRDKQTGENREKTEWHRVVLFGKLADIASGYLCKGSQIYI
EGQLQTREWDDNGVKRYTTEIVVKVGGSMQMLGGASKSVGSQPAQQSLPPAQSQAKSNKPPMDFEDDIPFAPIGLMYPHH
LINVI
Nucleotide
Download Length: 498 bp
>NTDB_id=843976 QQS39_RS07140 WP_285805633.1 1559050..1559547(-) (ssb) [Proteus appendicitidis strain HZ0627]
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACAAGTGAAAAATGGCGTGATAAACAAACGGGTGAAAACCGCGAAAAAACAG
AATGGCATCGTGTTGTTTTGTTTGGAAAACTTGCAGATATCGCCAGTGGCTATTTGTGCAAAGGCTCTCAAATTTATATT
GAGGGCCAACTACAAACACGCGAATGGGATGATAACGGTGTTAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGTGG
TTCGATGCAGATGCTAGGTGGCGCTAGTAAATCAGTAGGTTCACAACCGGCACAGCAAAGCCTGCCACCAGCTCAATCTC
AAGCCAAAAGCAATAAGCCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCGATTGGGCTTATGTATCCGCACCAT
TTAATTAACGTGATTTAA
ATGGCTAACGGATCAGTAAACAAAGTAATTCTTATCGGCAATTTAGGTCGTGATCCTGAAATTCGTTATCTTCCCTCTGG
TGGTGCTGTTGCCAATTTAGCTGTGGCCACAAGTGAAAAATGGCGTGATAAACAAACGGGTGAAAACCGCGAAAAAACAG
AATGGCATCGTGTTGTTTTGTTTGGAAAACTTGCAGATATCGCCAGTGGCTATTTGTGCAAAGGCTCTCAAATTTATATT
GAGGGCCAACTACAAACACGCGAATGGGATGATAACGGTGTTAAACGCTATACAACTGAAATTGTTGTAAAAGTTGGTGG
TTCGATGCAGATGCTAGGTGGCGCTAGTAAATCAGTAGGTTCACAACCGGCACAGCAAAGCCTGCCACCAGCTCAATCTC
AAGCCAAAAGCAATAAGCCACCAATGGATTTTGAGGATGATATTCCCTTCGCACCGATTGGGCTTATGTATCCGCACCAT
TTAATTAACGTGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.627 |
100 |
0.618 |
| ssb | Glaesserella parasuis strain SC1401 |
47.778 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
41.243 |
100 |
0.442 |
| ssb | Neisseria gonorrhoeae MS11 |
41.243 |
100 |
0.442 |