Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1232_RS29060 Genome accession   NZ_CP143357
Coordinates   6195057..6195554 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2023CK-01621     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6190057..6200554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1232_RS29040 (V1232_29040) pchD 6190841..6192484 (+) 1644 WP_023435683.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  V1232_RS29045 (V1232_29045) pchC 6192481..6193236 (+) 756 WP_023435682.1 pyochelin biosynthesis editing thioesterase PchC -
  V1232_RS29050 (V1232_29050) pchB 6193236..6193541 (+) 306 WP_031285628.1 isochorismate lyase PchB -
  V1232_RS29055 (V1232_29055) pchA 6193538..6194968 (+) 1431 WP_023435680.1 isochorismate synthase PchA -
  V1232_RS29060 (V1232_29060) ssb 6195057..6195554 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  V1232_RS29065 (V1232_29065) - 6195571..6196959 (-) 1389 WP_023435679.1 MFS transporter -
  V1232_RS29070 (V1232_29070) uvrA 6197173..6200010 (+) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  V1232_RS29075 (V1232_29075) bfr 6200082..6200546 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=843642 V1232_RS29060 WP_003114685.1 6195057..6195554(-) (ssb) [Pseudomonas aeruginosa strain 2023CK-01621]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=843642 V1232_RS29060 WP_003114685.1 6195057..6195554(-) (ssb) [Pseudomonas aeruginosa strain 2023CK-01621]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACTACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515