Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA08_RS18620 Genome accession   NZ_CP127331
Coordinates   3598671..3598958 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain BC116     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3593671..3603958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS18600 (QRA08_18545) - 3594847..3595044 (+) 198 WP_406652221.1 DUF4083 domain-containing protein -
  QRA08_RS18605 (QRA08_18550) - 3595076..3595537 (+) 462 WP_000024996.1 NUDIX hydrolase -
  QRA08_RS18610 (QRA08_18555) nadE 3595582..3596400 (-) 819 WP_088025274.1 ammonia-dependent NAD(+) synthetase -
  QRA08_RS18615 (QRA08_18560) - 3596675..3598555 (+) 1881 WP_075719450.1 FtsX-like permease family protein -
  QRA08_RS18620 (QRA08_18565) abrB 3598671..3598958 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA08_RS18625 (QRA08_18570) - 3599234..3600181 (+) 948 WP_053564709.1 serine protease -
  QRA08_RS18630 (QRA08_18575) - 3600221..3600529 (-) 309 WP_053564708.1 helix-turn-helix transcriptional regulator -
  QRA08_RS18635 (QRA08_18580) - 3600636..3601571 (+) 936 WP_053564707.1 aldo/keto reductase -
  QRA08_RS18640 (QRA08_18585) - 3601619..3602794 (+) 1176 WP_088025272.1 MFS transporter -
  QRA08_RS18645 (QRA08_18590) - 3603089..3603313 (-) 225 WP_000162602.1 hypothetical protein -
  QRA08_RS18650 (QRA08_18595) - 3603398..3603745 (-) 348 WP_000426321.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=843496 QRA08_RS18620 WP_000648324.1 3598671..3598958(+) (abrB) [Bacillus cereus strain BC116]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=843496 QRA08_RS18620 WP_000648324.1 3598671..3598958(+) (abrB) [Bacillus cereus strain BC116]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTCTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526