Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QRA08_RS16650 Genome accession   NZ_CP127331
Coordinates   3177230..3177832 (-) Length   200 a.a.
NCBI ID   WP_000155599.1    Uniprot ID   A0A9W5VMY9
Organism   Bacillus cereus strain BC116     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3172230..3182832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS16630 (QRA08_16585) dnaD 3172552..3173259 (+) 708 WP_000728542.1 DNA replication protein DnaD -
  QRA08_RS16635 (QRA08_16590) nth 3173275..3173922 (+) 648 WP_000933035.1 endonuclease III -
  QRA08_RS16640 (QRA08_16595) - 3173926..3174444 (+) 519 WP_088021954.1 YpoC family protein -
  QRA08_RS16645 (QRA08_16600) - 3174470..3177163 (-) 2694 WP_197233813.1 PBP1A family penicillin-binding protein -
  QRA08_RS16650 (QRA08_16605) recU 3177230..3177832 (-) 603 WP_000155599.1 Holliday junction resolvase RecU Machinery gene
  QRA08_RS16655 (QRA08_16610) - 3177936..3178961 (+) 1026 WP_088021956.1 DUF2515 domain-containing protein -
  QRA08_RS16660 - 3179113..3179292 (-) 180 WP_001987054.1 hypothetical protein -
  QRA08_RS16665 (QRA08_16615) - 3179378..3179620 (+) 243 WP_001252036.1 hypothetical protein -
  QRA08_RS16670 (QRA08_16620) - 3179636..3179980 (+) 345 WP_000786937.1 YppE family protein -
  QRA08_RS16675 (QRA08_16625) - 3180007..3180198 (-) 192 WP_000242652.1 YppF family protein -
  QRA08_RS16680 (QRA08_16630) - 3180376..3180933 (+) 558 WP_000487718.1 YppG family protein -
  QRA08_RS16685 (QRA08_16635) - 3181089..3181511 (+) 423 WP_000546292.1 CotD family spore coat protein -
  QRA08_RS16690 (QRA08_16640) - 3181568..3182122 (+) 555 WP_000862916.1 DUF1273 domain-containing protein -
  QRA08_RS16695 (QRA08_16645) gpsB 3182220..3182555 (+) 336 WP_000622431.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23325.54 Da        Isoelectric Point: 9.4336

>NTDB_id=843495 QRA08_RS16650 WP_000155599.1 3177230..3177832(-) (recU) [Bacillus cereus strain BC116]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=843495 QRA08_RS16650 WP_000155599.1 3177230..3177832(-) (recU) [Bacillus cereus strain BC116]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACGACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATAGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTCATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGCCAA
AATACAGGTGGACGCAAGTCGATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635