Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QRA08_RS15320 Genome accession   NZ_CP127331
Coordinates   2932906..2933229 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain BC116     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2927906..2938229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS15295 (QRA08_15250) - 2928238..2929524 (+) 1287 WP_088024907.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QRA08_RS15300 (QRA08_15255) sipW 2929727..2930296 (+) 570 WP_000767792.1 signal peptidase I SipW -
  QRA08_RS15305 (QRA08_15260) - 2930361..2930948 (+) 588 WP_000172852.1 CalY family protein -
  QRA08_RS15310 (QRA08_15265) - 2931068..2931853 (+) 786 WP_406651923.1 DUF4047 domain-containing protein -
  QRA08_RS15315 (QRA08_15270) calY 2932240..2932833 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  QRA08_RS15320 (QRA08_15275) sinR 2932906..2933229 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  QRA08_RS15325 (QRA08_15280) - 2933309..2933443 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  QRA08_RS15330 (QRA08_15285) inhA1 2933786..2936173 (+) 2388 WP_406651925.1 M6 family metalloprotease immune inhibitor InhA1 -
  QRA08_RS15335 (QRA08_15290) - 2936345..2937712 (+) 1368 WP_069355257.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=843493 QRA08_RS15320 WP_000578885.1 2932906..2933229(-) (sinR) [Bacillus cereus strain BC116]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=843493 QRA08_RS15320 WP_000578885.1 2932906..2933229(-) (sinR) [Bacillus cereus strain BC116]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692