Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QRA08_RS20890 Genome accession   NZ_CP127331
Coordinates   4036556..4036834 (+) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain BC116     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4031556..4041834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS20870 (QRA08_20820) - 4032347..4032949 (+) 603 WP_406652497.1 hypothetical protein -
  QRA08_RS20875 (QRA08_20825) - 4033254..4034435 (+) 1182 WP_000724490.1 agmatine/peptidylarginine deiminase -
  QRA08_RS20880 (QRA08_20830) - 4034909..4035160 (-) 252 WP_000827555.1 response regulator transcription factor -
  QRA08_RS20885 (QRA08_20835) - 4035537..4036415 (+) 879 WP_000397972.1 helix-turn-helix domain-containing protein -
  QRA08_RS20890 (QRA08_20840) abrB 4036556..4036834 (+) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QRA08_RS20895 (QRA08_20845) - 4037360..4038610 (+) 1251 WP_088024051.1 hypothetical protein -
  QRA08_RS20900 (QRA08_20850) - 4038678..4039436 (+) 759 WP_029442323.1 TSUP family transporter -
  QRA08_RS20905 (QRA08_20855) - 4039689..4040348 (+) 660 WP_000876934.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=843498 QRA08_RS20890 WP_000842216.1 4036556..4036834(+) (abrB) [Bacillus cereus strain BC116]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=843498 QRA08_RS20890 WP_000842216.1 4036556..4036834(+) (abrB) [Bacillus cereus strain BC116]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGCCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489