Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QRA08_RS08345 Genome accession   NZ_CP127331
Coordinates   1591995..1592516 (-) Length   173 a.a.
NCBI ID   WP_002094213.1    Uniprot ID   A0A9W7QTR5
Organism   Bacillus cereus strain BC116     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1586995..1597516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS08325 (QRA08_08300) rplI 1588205..1588651 (-) 447 WP_000864223.1 50S ribosomal protein L9 -
  QRA08_RS08330 (QRA08_08305) - 1588648..1590621 (-) 1974 WP_001113779.1 DHH family phosphoesterase -
  QRA08_RS08335 (QRA08_08310) - 1590700..1591635 (-) 936 WP_406653978.1 YybS family protein -
  QRA08_RS08340 (QRA08_08315) rpsR 1591716..1591949 (-) 234 WP_000918873.1 30S ribosomal protein S18 -
  QRA08_RS08345 (QRA08_08320) ssbA 1591995..1592516 (-) 522 WP_002094213.1 single-stranded DNA-binding protein Machinery gene
  QRA08_RS08350 (QRA08_08325) rpsF 1592543..1592833 (-) 291 WP_001233781.1 30S ribosomal protein S6 -
  QRA08_RS08355 (QRA08_08330) ychF 1593025..1594125 (-) 1101 WP_000524670.1 redox-regulated ATPase YchF -
  QRA08_RS08360 (QRA08_08335) - 1594241..1594399 (-) 159 WP_153577919.1 DUF951 domain-containing protein -
  QRA08_RS08365 (QRA08_08340) - 1594459..1595340 (-) 882 WP_000365111.1 mechanosensitive ion channel family protein -
  QRA08_RS08370 (QRA08_08345) yyaC 1595600..1596196 (+) 597 WP_053563259.1 spore protease YyaC -
  QRA08_RS08375 (QRA08_08350) spo0J 1596217..1597068 (-) 852 WP_078400658.1 stage 0 sporulation protein Spo0J -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18779.55 Da        Isoelectric Point: 4.9222

>NTDB_id=843475 QRA08_RS08345 WP_002094213.1 1591995..1592516(-) (ssbA) [Bacillus cereus strain BC116]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQGSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=843475 QRA08_RS08345 WP_002094213.1 1591995..1592516(-) (ssbA) [Bacillus cereus strain BC116]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTAGCAAATTATTTGAAAAAAGGAAGCTTAGCAGGCGTAGATGGACGTCTTCAAACTCGT
AATTACGATGGACAAGACGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAAAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAGGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGGAACTCTGGATTTACGAAGAATGACGATCCATTTTCAAATGTA
GGTCAACCGATCGACATTTCCGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.813

100

0.387