Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QRA08_RS02115 Genome accession   NZ_CP127331
Coordinates   380549..381592 (-) Length   347 a.a.
NCBI ID   WP_001013187.1    Uniprot ID   -
Organism   Bacillus cereus strain BC116     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375549..386592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA08_RS02070 (QRA08_02065) - 375982..376182 (-) 201 WP_000106083.1 YqzE family protein -
  QRA08_RS02075 (QRA08_02070) - 376221..376718 (-) 498 WP_000836660.1 shikimate kinase -
  QRA08_RS02080 (QRA08_02075) - 376834..377484 (-) 651 WP_000183863.1 2OG-Fe(II) oxygenase -
  QRA08_RS02085 (QRA08_02080) comGG 377659..378030 (-) 372 WP_406653434.1 competence type IV pilus minor pilin ComGG -
  QRA08_RS02090 (QRA08_02085) comGF 378027..378497 (-) 471 WP_000923102.1 competence type IV pilus minor pilin ComGF -
  QRA08_RS02095 (QRA08_02090) - 378467..378769 (-) 303 WP_000829462.1 hypothetical protein -
  QRA08_RS02100 (QRA08_02095) comGD 378762..379217 (-) 456 WP_002094140.1 competence type IV pilus minor pilin ComGD -
  QRA08_RS02105 (QRA08_02100) comGC 379214..379513 (-) 300 WP_053563652.1 competence type IV pilus major pilin ComGC -
  QRA08_RS02110 (QRA08_02105) comGB 379525..380556 (-) 1032 WP_083530659.1 competence type IV pilus assembly protein ComGB -
  QRA08_RS02115 (QRA08_02110) comGA 380549..381592 (-) 1044 WP_001013187.1 competence type IV pilus ATPase ComGA Machinery gene
  QRA08_RS02120 (QRA08_02115) - 381798..382493 (+) 696 WP_000434107.1 metalloregulator ArsR/SmtB family transcription factor -
  QRA08_RS02125 (QRA08_02120) - 382620..382862 (+) 243 WP_000375619.1 DUF2626 domain-containing protein -
  QRA08_RS02130 (QRA08_02125) - 382970..384364 (+) 1395 WP_001094344.1 L-cystine transporter -
  QRA08_RS02135 (QRA08_02130) - 384444..384836 (-) 393 Protein_426 hypothetical protein -
  QRA08_RS02140 (QRA08_02135) - 384924..385139 (-) 216 WP_001008326.1 DUF3912 family protein -
  QRA08_RS02145 (QRA08_02140) - 385393..385704 (+) 312 WP_001093240.1 hypothetical protein -
  QRA08_RS02150 (QRA08_02145) - 385739..386227 (-) 489 WP_141544804.1 hypothetical protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 39164.52 Da        Isoelectric Point: 8.5432

>NTDB_id=843459 QRA08_RS02115 WP_001013187.1 380549..381592(-) (comGA) [Bacillus cereus strain BC116]
MNGIEIFANTILKEACRVQASDLHIVPRQKDVAVQLRVGKDLMTRHCIEKEFGEKLVSHFKFLASMDIGEKRKPQNGSLY
LQIDGQEVYLRLSTLPTVYQESLVIRLHLQASVQPLSHLSLFPSTAAKLLSFLRYSQGLLVFTGPTGSGKTTTMYALLEV
IRKKKTRRIITLEDPVEKRSDDVLQIQINEKAGLTYETGLKAILRHDPDIILVGEIRDEETAKIAIRASLTGHLVMTTLH
TNDAKGAIIRFMDYGITRQEIEQSLLAVAAQRLVELKCPFCRGKCSTLCKSMRQVRQASIYELLYGYELKQALKEADGEC
VTYKHETLESSIRKGYALGFLEDDVYV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=843459 QRA08_RS02115 WP_001013187.1 380549..381592(-) (comGA) [Bacillus cereus strain BC116]
ATGAATGGGATTGAAATTTTTGCGAATACAATTTTAAAAGAAGCGTGTAGGGTACAAGCGTCAGATTTACATATTGTGCC
CCGGCAGAAGGATGTAGCGGTGCAACTACGTGTAGGAAAAGATTTAATGACGAGACATTGTATTGAAAAGGAGTTTGGAG
AAAAACTTGTCTCACATTTTAAATTTTTAGCATCTATGGACATAGGAGAGAAACGGAAGCCACAGAATGGTTCGTTGTAT
TTGCAAATTGATGGACAAGAAGTGTATTTACGCCTTTCAACACTTCCAACAGTATATCAAGAAAGTCTCGTTATTCGCCT
TCATTTACAAGCATCTGTGCAGCCCTTATCACATCTTTCGTTATTTCCAAGTACGGCAGCAAAACTACTCTCGTTTTTAC
GCTATTCACAGGGGCTACTCGTGTTTACTGGACCGACTGGTTCTGGGAAGACAACGACAATGTATGCATTATTAGAGGTA
ATTAGAAAAAAGAAAACACGCCGCATCATTACACTTGAAGATCCGGTTGAAAAAAGAAGTGACGATGTATTACAAATTCA
AATAAATGAAAAAGCGGGTCTCACATATGAAACAGGATTAAAGGCTATTTTACGTCATGATCCAGATATTATTTTAGTCG
GTGAAATCCGTGATGAAGAAACAGCAAAAATAGCTATAAGAGCAAGTTTGACAGGACATTTAGTCATGACAACGCTGCAT
ACGAATGATGCGAAAGGAGCAATCATTCGTTTCATGGATTATGGTATAACGAGGCAAGAGATTGAACAGTCTTTATTGGC
TGTAGCTGCACAGCGACTTGTCGAATTGAAGTGTCCGTTTTGCAGAGGAAAGTGCTCAACTTTATGTAAATCAATGAGGC
AAGTAAGGCAAGCAAGCATTTATGAGCTGCTATATGGATATGAGTTAAAACAAGCGCTTAAAGAAGCAGATGGAGAATGT
GTTACTTACAAACATGAGACTTTAGAATCGTCAATAAGAAAAGGATATGCTTTAGGTTTTTTAGAAGATGATGTTTATGT
TTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

56.196

100

0.562
  pilB Haemophilus influenzae 86-028NP

39.441

92.795

0.366