Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QO259_RS00270 Genome accession   NZ_CP127244
Coordinates   43894..44505 (+) Length   203 a.a.
NCBI ID   WP_035470404.1    Uniprot ID   -
Organism   Salinicola sp. JS01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 38894..49505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QO259_RS00260 (QO259_00260) uvrA 39407..42268 (-) 2862 WP_285951353.1 excinuclease ABC subunit UvrA -
  QO259_RS00265 (QO259_00265) - 42475..43857 (+) 1383 WP_285951354.1 MFS transporter -
  QO259_RS00270 (QO259_00270) ssb 43894..44505 (+) 612 WP_035470404.1 single-stranded DNA-binding protein Machinery gene
  QO259_RS00275 (QO259_00275) - 44732..46783 (+) 2052 WP_285951355.1 oligopeptide transporter, OPT family -
  QO259_RS00280 (QO259_00280) - 46803..47675 (-) 873 WP_285951356.1 SMP-30/gluconolactonase/LRE family protein -
  QO259_RS00285 (QO259_00285) - 47867..48745 (+) 879 WP_233076903.1 sugar nucleotide-binding protein -
  QO259_RS00290 (QO259_00290) - 48742..49500 (+) 759 WP_207037167.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22375.34 Da        Isoelectric Point: 5.2238

>NTDB_id=843029 QO259_RS00270 WP_035470404.1 43894..44505(+) (ssb) [Salinicola sp. JS01]
MARGVNKVILIGNLGQDPEVRFLPSGNPVCNLRIATTDTWTDRQSGQRQERTEWHSVVLFNKLAEIAQQYVKKGSRIYIE
GRLQTRKWQGQDGQDRYSTEIVGNDMQMLDSRSGQGGGDYNQNQYGGAPQQPQGGYGQQQPAPAQQGGGYGQQQPAPAQQ
GGYGNQPQRPPQNQPAPQPNQQNANYGAPNPGSFDDFDDEIPF

Nucleotide


Download         Length: 612 bp        

>NTDB_id=843029 QO259_RS00270 WP_035470404.1 43894..44505(+) (ssb) [Salinicola sp. JS01]
ATGGCCCGAGGTGTGAACAAAGTCATCCTGATCGGCAACCTGGGACAGGATCCGGAAGTCCGCTTCCTGCCGTCGGGCAA
TCCGGTGTGCAACCTGCGCATCGCGACCACCGATACCTGGACCGACCGTCAGAGCGGCCAGCGTCAGGAGCGTACCGAGT
GGCACAGTGTGGTGCTGTTCAACAAGCTGGCGGAGATCGCCCAGCAGTACGTCAAGAAGGGCTCGCGGATCTATATCGAA
GGACGCCTGCAGACCCGTAAGTGGCAGGGGCAGGATGGCCAGGACCGCTACTCCACCGAGATCGTCGGCAACGATATGCA
GATGCTCGACTCGCGCAGCGGCCAAGGTGGTGGTGACTACAACCAGAACCAGTATGGCGGTGCGCCGCAGCAGCCCCAGG
GTGGTTATGGTCAGCAGCAGCCTGCGCCGGCCCAGCAGGGCGGCGGCTATGGCCAGCAGCAGCCGGCACCGGCTCAGCAG
GGCGGCTACGGTAACCAGCCCCAGCGTCCGCCGCAGAACCAGCCGGCGCCGCAGCCCAACCAGCAGAACGCTAACTACGG
CGCGCCGAACCCGGGCAGCTTCGACGATTTCGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.282

100

0.507
  ssb Neisseria gonorrhoeae MS11

49.01

99.507

0.488
  ssb Neisseria meningitidis MC58

48.515

99.507

0.483
  ssb Glaesserella parasuis strain SC1401

48.02

99.507

0.478