Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VYI52_RS23145 Genome accession   NZ_CP142949
Coordinates   4723176..4723712 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain EC190329     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4718176..4728712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI52_RS23125 (VYI52_23125) soxR 4719904..4720368 (-) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -
  VYI52_RS23130 (VYI52_23130) soxS 4720454..4720777 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  VYI52_RS23135 (VYI52_23135) pdeC 4720780..4722366 (-) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  VYI52_RS23140 (VYI52_23140) yjcB 4722796..4723077 (+) 282 WP_001295689.1 YjcB family protein -
  VYI52_RS23145 (VYI52_23145) ssb 4723176..4723712 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VYI52_RS23150 (VYI52_23150) uvrA 4723967..4726789 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  VYI52_RS23155 (VYI52_23155) yjbR 4726824..4727180 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  VYI52_RS23160 (VYI52_23160) yjbQ 4727184..4727600 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VYI52_RS23165 (VYI52_23165) aphA 4727711..4728424 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=843013 VYI52_RS23145 WP_000168305.1 4723176..4723712(-) (ssb) [Escherichia coli strain EC190329]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=843013 VYI52_RS23145 WP_000168305.1 4723176..4723712(-) (ssb) [Escherichia coli strain EC190329]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489