Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QQ016_RS13395 Genome accession   NZ_CP127228
Coordinates   3001612..3002943 (+) Length   443 a.a.
NCBI ID   WP_285962490.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain KRS022     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2996612..3007943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ016_RS13370 pgeF 2996747..2997472 (-) 726 WP_285962487.1 peptidoglycan editing factor PgeF -
  QQ016_RS13375 rluD 2997472..2998431 (-) 960 WP_213630417.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQ016_RS13380 - 2998592..2999611 (+) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  QQ016_RS13385 - 2999791..3000027 (+) 237 WP_285962488.1 PP0621 family protein -
  QQ016_RS13390 pilS 3000017..3001609 (+) 1593 WP_285962489.1 ATP-binding protein Regulator
  QQ016_RS13395 pilR 3001612..3002943 (+) 1332 WP_285962490.1 sigma-54 dependent transcriptional regulator Regulator
  QQ016_RS13400 thiO 3002956..3004053 (-) 1098 WP_285962491.1 glycine oxidase ThiO -
  QQ016_RS13405 - 3004099..3004608 (+) 510 WP_285962492.1 GspH/FimT family pseudopilin -
  QQ016_RS13410 - 3004723..3005241 (+) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  QQ016_RS13415 pilV 3005228..3005803 (+) 576 WP_285962493.1 type IV pilus modification protein PilV -
  QQ016_RS13420 - 3005800..3006609 (+) 810 WP_285962494.1 PilW family protein -
  QQ016_RS13425 - 3006619..3007161 (+) 543 WP_271105048.1 PilX N-terminal domain-containing pilus assembly protein -
  QQ016_RS13430 - 3007177..3007521 (+) 345 WP_263152746.1 hypothetical protein -

Sequence

Protein


Download         Length: 443 a.a.        Molecular weight: 49441.66 Da        Isoelectric Point: 5.5835

>NTDB_id=842883 QQ016_RS13395 WP_285962490.1 3001612..3002943(+) (pilR) [Pseudomonas tohonis strain KRS022]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAAEPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAVNALKAGAFDFLTKPVDLSRLRELVAAALRLRTSGSGDTPMDNRLLGDSPPMKALRNQIQKLARSQAPVY
ISGESGSGKELVARMIHEQGPRHEDPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKIGLFQAAHGGTLFLDEVADLP
LPMQVKLLRAIQEKAIRTIGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPQLADVM
LKRLAADSAAASITRDAMEKLKSYRFPGNVRELENMLERAYTLCDNDQIQPEDLRLADAPSPSESGEADLAQVSNLEDYL
EEIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1332 bp        

>NTDB_id=842883 QQ016_RS13395 WP_285962490.1 3001612..3002943(+) (pilR) [Pseudomonas tohonis strain KRS022]
ATGACCAGACAGAGAGCACTCATCGTCGACGACGAGCCCGATATCCGCGAGCTGCTGGAGATCACCCTCGGCCGGATGAA
GCTGGATACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGTGAACTCCTCGCCGCCGAACCCTTCGACCTGTGCCTGACCG
ACATGCGCCTGCCGGATGGCACCGGCCTCGACCTCGTGCAGCACATCCAGCAGCGCCATCCGCAGGTCCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCCGTCAACGCGCTGAAGGCCGGCGCCTTCGACTTCCTCACCAAGCCGGTGGA
CCTCAGCCGGCTTCGCGAGCTGGTCGCCGCGGCCCTACGCCTGCGCACCAGCGGCAGCGGCGACACGCCGATGGACAACC
GCCTGCTCGGCGACTCGCCACCGATGAAGGCGCTGCGCAACCAGATCCAGAAGCTCGCGCGCAGCCAGGCACCCGTCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAACTGGTGGCCCGCATGATCCACGAGCAGGGCCCGCGCCACGAAGACCCCTT
CGTACCGGTCAACTGCGGCGCCATTCCCTCGGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GCGCCATCGAAGACAAGATCGGCCTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTGGACGAAGTGGCAGACCTGCCC
CTGCCCATGCAGGTGAAACTGCTGCGTGCCATCCAGGAAAAGGCCATTCGCACCATAGGTGGCCAGCAGGAAGTGGTGGT
GGACGTACGCATTCTCAGCGCCACCCACAAGGACCTGGCTGCCGAAGTGGCGGCCGGGCGCTTCCGCCAGGACCTCTATT
ACCGCCTGAACGTCATCGAACTCAGTGTCCCCCCGCTGCGCGAGCGCCGCGAGGACATCCCGCAACTGGCCGATGTGATG
CTCAAGCGCCTGGCTGCGGACAGCGCCGCGGCCAGCATCACCCGCGACGCCATGGAAAAGCTCAAGAGCTATCGCTTCCC
CGGCAACGTCCGCGAGCTGGAAAACATGCTCGAGCGGGCCTACACGCTCTGCGACAACGACCAGATCCAGCCCGAGGACC
TGCGCCTGGCCGACGCGCCCTCGCCGTCGGAAAGCGGCGAGGCCGACCTTGCGCAGGTCAGCAACCTCGAGGATTACCTG
GAAGAGATCGAGCGCAAGCTCATCATGCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCCCAGCGCCTGGG
CCTGACCTTCCGCTCGATGCGCTACCGCCTTAAGAAGCTGGGGATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(400-440)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

85.843

100

0.862
  pilR Acinetobacter baumannii strain A118

49.892

100

0.519
  luxO Vibrio cholerae strain A1552

37.557

99.774

0.375