Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QQ016_RS13390 Genome accession   NZ_CP127228
Coordinates   3000017..3001609 (+) Length   530 a.a.
NCBI ID   WP_285962489.1    Uniprot ID   -
Organism   Pseudomonas tohonis strain KRS022     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2995017..3006609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ016_RS13370 pgeF 2996747..2997472 (-) 726 WP_285962487.1 peptidoglycan editing factor PgeF -
  QQ016_RS13375 rluD 2997472..2998431 (-) 960 WP_213630417.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QQ016_RS13380 - 2998592..2999611 (+) 1020 WP_173173376.1 outer membrane protein assembly factor BamD -
  QQ016_RS13385 - 2999791..3000027 (+) 237 WP_285962488.1 PP0621 family protein -
  QQ016_RS13390 pilS 3000017..3001609 (+) 1593 WP_285962489.1 ATP-binding protein Regulator
  QQ016_RS13395 pilR 3001612..3002943 (+) 1332 WP_285962490.1 sigma-54 dependent transcriptional regulator Regulator
  QQ016_RS13400 thiO 3002956..3004053 (-) 1098 WP_285962491.1 glycine oxidase ThiO -
  QQ016_RS13405 - 3004099..3004608 (+) 510 WP_285962492.1 GspH/FimT family pseudopilin -
  QQ016_RS13410 - 3004723..3005241 (+) 519 WP_263152752.1 GspH/FimT family pseudopilin -
  QQ016_RS13415 pilV 3005228..3005803 (+) 576 WP_285962493.1 type IV pilus modification protein PilV -
  QQ016_RS13420 - 3005800..3006609 (+) 810 WP_285962494.1 PilW family protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59032.42 Da        Isoelectric Point: 9.2203

>NTDB_id=842882 QQ016_RS13390 WP_285962489.1 3000017..3001609(+) (pilS) [Pseudomonas tohonis strain KRS022]
MSGESTVLGGQPARRIFRLYNLYRLIIGLALVGLISSELDRELLDLARAQLFRNASWFYLLLNILIALMVRHPKHMLQVF
SLALVDVILLSCLFYAAGGTPSGIGNLVIVAVAIANILLRGRVGLLIAAVATIGMIYLTFYLSLSRPEVANQYVQAGALG
ALCFAAALFVQGISKRLQLSETLAEKRAADVANLEALNALILQRMRTGILVLDAQHRVLLANQGAQTLLGRDDLAGRIID
PQSPELVKRLQQWMDNPALRPQSLQAMPEGPVLQPSFVPLQRGEQRDTLIFLEDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEELTGPDRRLAQIIQDQSRRMNLVIENVLQLSRRRQSEPQLLDLKYWLHRFASEFRNASGPG
QTLHIETNSGTIQTRMDPHQLTQVLTNLVQNGLRYSFQKNKVGQVWLRLFRDPESDLPILEIMDDGAGVPPEQVQHIFEP
FYTTESKGTGLGLYISRELCESNQARLDYRPRETGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=842882 QQ016_RS13390 WP_285962489.1 3000017..3001609(+) (pilS) [Pseudomonas tohonis strain KRS022]
GTGAGCGGTGAGTCGACGGTCCTGGGCGGGCAGCCGGCGCGGCGCATCTTCCGCCTCTACAACCTCTACCGGCTGATCAT
CGGCCTCGCGCTGGTCGGGCTGATCTCCAGCGAGCTGGACAGGGAACTGCTCGACCTCGCCCGCGCGCAGCTGTTCCGCA
ACGCCTCCTGGTTCTACCTGCTGCTGAACATCCTGATCGCCTTGATGGTCCGCCATCCGAAGCACATGCTGCAGGTGTTC
AGCCTGGCACTCGTGGACGTGATCCTGCTGTCCTGCCTGTTCTATGCAGCCGGCGGTACGCCCAGCGGCATCGGCAACCT
GGTGATAGTCGCGGTGGCCATCGCCAACATCCTGCTCCGGGGCCGGGTCGGCCTGCTGATCGCCGCCGTCGCCACCATCG
GCATGATCTACCTGACCTTCTACCTCAGCCTCAGCCGTCCGGAAGTCGCCAACCAGTACGTACAGGCCGGTGCGCTCGGC
GCCCTCTGTTTTGCGGCCGCCCTCTTCGTCCAGGGCATCAGCAAACGCCTGCAACTGAGCGAGACCCTGGCGGAAAAGCG
CGCCGCCGACGTCGCCAACCTCGAGGCTCTCAACGCCCTGATCCTGCAACGGATGCGCACCGGTATCCTGGTGCTCGACG
CGCAACACCGCGTGCTCCTGGCCAACCAGGGCGCCCAGACCCTGCTGGGCCGCGATGACCTCGCCGGGCGCATCATCGAC
CCGCAGAGCCCGGAACTGGTCAAGCGTCTCCAGCAATGGATGGACAACCCCGCCCTGCGCCCGCAGAGCCTGCAGGCCAT
GCCCGAAGGCCCGGTGCTGCAACCCAGCTTCGTACCGCTGCAACGGGGCGAACAACGCGACACCTTGATCTTCCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCGCAACAGCTCAAGCTCGCCTCCCTCGGCCGCCTGACCGCCGGCATCGCCCATGAG
ATACGCAACCCCCTGGGCGCCATCAGCCATGCCGCGCAGCTGCTGCAGGAGTCGGAAGAGCTGACCGGCCCAGACCGACG
CCTGGCGCAGATCATCCAGGACCAGTCGCGACGCATGAACCTGGTGATCGAGAACGTCCTGCAGCTGTCACGCCGTCGCC
AGTCAGAACCCCAGCTGCTCGACCTGAAGTACTGGCTGCACCGCTTCGCCAGCGAATTCCGCAATGCCTCAGGCCCCGGC
CAGACACTGCACATCGAGACCAACAGCGGCACGATCCAGACCCGCATGGACCCGCACCAGCTGACCCAGGTACTGACCAA
CCTGGTACAGAACGGTCTGCGCTACAGTTTTCAGAAGAACAAGGTCGGACAGGTCTGGCTTCGCCTATTCCGTGATCCGG
AAAGCGACCTGCCCATCCTGGAGATCATGGATGATGGAGCCGGCGTGCCGCCCGAGCAGGTGCAGCACATCTTCGAACCC
TTCTACACGACTGAAAGCAAGGGTACCGGGCTCGGCCTGTACATCTCGCGCGAGCTGTGCGAGAGCAACCAGGCCCGCCT
CGACTACCGTCCACGCGAAACCGGCGGCAGCTGTTTTCGCATTACCTTTGCCCACCCGCGCAAATTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.038

100

0.66