Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VYI51_RS18040 Genome accession   NZ_CP142919
Coordinates   3697844..3698380 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain B19429     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3692844..3703380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI51_RS18020 (VYI51_18025) aphA 3693132..3693845 (+) 714 WP_001226928.1 acid phosphatase AphA -
  VYI51_RS18025 (VYI51_18030) yjbQ 3693956..3694372 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  VYI51_RS18030 (VYI51_18035) yjbR 3694376..3694732 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  VYI51_RS18035 (VYI51_18040) uvrA 3694767..3697589 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  VYI51_RS18040 (VYI51_18045) ssb 3697844..3698380 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  VYI51_RS18045 (VYI51_18050) yjcB 3698479..3698760 (-) 282 WP_001295689.1 YjcB family protein -
  VYI51_RS18050 (VYI51_18055) pdeC 3699190..3700776 (+) 1587 WP_001550430.1 c-di-GMP phosphodiesterase PdeC -
  VYI51_RS18055 (VYI51_18060) soxS 3700779..3701102 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  VYI51_RS18060 (VYI51_18065) soxR 3701188..3701652 (+) 465 WP_000412424.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=842584 VYI51_RS18040 WP_000168305.1 3697844..3698380(+) (ssb) [Escherichia coli strain B19429]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=842584 VYI51_RS18040 WP_000168305.1 3697844..3698380(+) (ssb) [Escherichia coli strain B19429]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCTGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTAGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
TGGCACCATGCAGATGTTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCTGCT
CCGGCAGCACCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489