Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   COW1_RS15840 Genome accession   NZ_AP024239
Coordinates   3333700..3334158 (+) Length   152 a.a.
NCBI ID   WP_201344721.1    Uniprot ID   A0A7R7GP79
Organism   Thiohalobacter sp. COW1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3328700..3339158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COW1_RS15830 (TspCOW1_31350) uvrA 3329277..3332120 (-) 2844 WP_201344719.1 excinuclease ABC subunit UvrA -
  COW1_RS15835 (TspCOW1_31360) - 3332195..3333595 (+) 1401 WP_370590872.1 MFS transporter -
  COW1_RS15840 (TspCOW1_31370) ssb 3333700..3334158 (+) 459 WP_201344721.1 single-stranded DNA-binding protein Machinery gene
  COW1_RS15845 (TspCOW1_31380) - 3334268..3334465 (-) 198 WP_096367072.1 hypothetical protein -
  COW1_RS15850 (TspCOW1_31390) mraZ 3334847..3335299 (+) 453 WP_096367071.1 division/cell wall cluster transcriptional repressor MraZ -
  COW1_RS15855 (TspCOW1_31400) rsmH 3335299..3336228 (+) 930 WP_096367070.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  COW1_RS15860 (TspCOW1_31410) ftsL 3336225..3336485 (+) 261 WP_096367069.1 cell division protein FtsL -
  COW1_RS15865 (TspCOW1_31420) - 3336482..3338215 (+) 1734 WP_096367068.1 penicillin-binding protein 2 -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 16452.11 Da        Isoelectric Point: 5.2797

>NTDB_id=84253 COW1_RS15840 WP_201344721.1 3333700..3334158(+) (ssb) [Thiohalobacter sp. COW1]
MARGINKVILVGNLGKDPEVRYMPSGGAVANVTLATSDQWKDKQTGEQRERTEWHNVVFYQRLAEIVGEYLKKGSQVYVE
GSLRTRKWQDKNGNDRYTTEIIASEMQMLGGRGGGGGGSANYNSNRAPAAAESQGGGGSGGFDEGFDDDIPF

Nucleotide


Download         Length: 459 bp        

>NTDB_id=84253 COW1_RS15840 WP_201344721.1 3333700..3334158(+) (ssb) [Thiohalobacter sp. COW1]
ATGGCGCGCGGCATCAACAAGGTGATTCTGGTCGGCAACCTGGGCAAGGATCCCGAGGTCCGGTACATGCCCAGCGGCGG
GGCCGTGGCCAATGTCACCCTTGCCACCTCGGATCAGTGGAAGGACAAGCAGACCGGCGAGCAGCGCGAGCGCACCGAAT
GGCACAATGTGGTCTTCTACCAGCGCCTGGCCGAGATCGTCGGCGAGTATCTGAAGAAGGGTTCCCAGGTCTATGTCGAG
GGCAGCCTGCGCACCCGCAAGTGGCAGGACAAGAACGGCAATGATCGCTACACCACCGAGATCATCGCCTCCGAGATGCA
GATGCTGGGCGGTCGCGGCGGCGGTGGTGGCGGCAGCGCCAACTACAACAGCAATCGGGCGCCTGCGGCGGCCGAGAGCC
AGGGCGGCGGCGGCAGCGGCGGCTTCGACGAGGGCTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7R7GP79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.107

100

0.618
  ssb Glaesserella parasuis strain SC1401

49.438

100

0.579
  ssb Neisseria meningitidis MC58

44.828

100

0.513
  ssb Neisseria gonorrhoeae MS11

44.828

100

0.513

Multiple sequence alignment