Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VP464_RS06540 Genome accession   NZ_CP142892
Coordinates   1340273..1340656 (+) Length   127 a.a.
NCBI ID   WP_033915473.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B20AB01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1335273..1345656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP464_RS06525 (VP464_06530) - 1337142..1338260 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  VP464_RS06530 (VP464_06535) - 1338505..1339434 (+) 930 WP_001091151.1 IS5-like element ISAba10 family transposase -
  VP464_RS06535 (VP464_06540) - 1339487..1339990 (-) 504 Protein_1229 hypothetical protein -
  VP464_RS06540 (VP464_06545) pilG 1340273..1340656 (+) 384 WP_033915473.1 twitching motility response regulator PilG Regulator
  VP464_RS06545 (VP464_06550) pilH 1340680..1341042 (+) 363 WP_000101096.1 response regulator Machinery gene
  VP464_RS06550 (VP464_06555) - 1341103..1341639 (+) 537 WP_000729757.1 chemotaxis protein CheW -
  VP464_RS06555 (VP464_06560) - 1341686..1343764 (+) 2079 WP_000505931.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14234.25 Da        Isoelectric Point: 4.5762

>NTDB_id=842325 VP464_RS06540 WP_033915473.1 1340273..1340656(+) (pilG) [Acinetobacter baumannii strain B20AB01]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGFFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=842325 VP464_RS06540 WP_033915473.1 1340273..1340656(+) (pilG) [Acinetobacter baumannii strain B20AB01]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTTTTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

99.213

100

0.992
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37