Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   QQS40_RS10600 Genome accession   NZ_CP127167
Coordinates   2109234..2109914 (-) Length   226 a.a.
NCBI ID   WP_289902453.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain HP01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104234..2114914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQS40_RS10585 nrdR 2105030..2105479 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  QQS40_RS10590 recC 2105557..2108916 (-) 3360 WP_297569274.1 exodeoxyribonuclease V subunit gamma -
  QQS40_RS10595 comQ 2108954..2109220 (-) 267 WP_049364346.1 DUF5374 domain-containing protein Machinery gene
  QQS40_RS10600 comP 2109234..2109914 (-) 681 WP_289902453.1 DUF2572 family protein Machinery gene
  QQS40_RS10605 comO 2109914..2110630 (-) 717 WP_369866785.1 hypothetical protein Machinery gene
  QQS40_RS10610 comN 2110627..2111145 (-) 519 WP_297569283.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  QQS40_RS10615 suhB 2111346..2112146 (+) 801 WP_289902456.1 inositol-1-monophosphatase -
  QQS40_RS10620 bioB 2112192..2113208 (-) 1017 WP_102704187.1 biotin synthase BioB -
  QQS40_RS10625 thiQ 2113282..2113911 (-) 630 WP_308602946.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25252.18 Da        Isoelectric Point: 9.2585

>NTDB_id=842326 QQS40_RS10600 WP_289902453.1 2109234..2109914(-) (comP) [Haemophilus parainfluenzae strain HP01]
MKKGIVTLTALILLSGLLALILLFDEQIFAFFRAQMSLRKYYVEQSLPLQKISQQQQTHICQNLPLNGTEKVKQIFFESS
GAEDKVAYSVWCKRAELFKKSPTKGINENMLRDFISSEKQADFQPHFVKVDTTLTVQKTPQVYWITQSQLEIKGNVSGIL
LAEGDLSLIGKGRISGAVITGGSLKLEGGVTVAYGKAVVTKLVQEYSQWRLVDKSWSDLSAQDQSE

Nucleotide


Download         Length: 681 bp        

>NTDB_id=842326 QQS40_RS10600 WP_289902453.1 2109234..2109914(-) (comP) [Haemophilus parainfluenzae strain HP01]
ATGAAAAAAGGGATTGTGACACTGACGGCACTGATTTTACTTTCGGGCTTATTGGCGCTGATCTTATTATTTGATGAACA
GATCTTTGCGTTTTTTCGAGCTCAAATGAGTTTGCGAAAATATTACGTAGAACAGAGCCTTCCTTTACAGAAAATCAGTC
AGCAACAACAAACACACATTTGCCAAAACTTGCCTTTAAATGGTACTGAAAAAGTGAAACAAATCTTTTTCGAGTCTTCA
GGGGCAGAGGATAAAGTGGCCTATTCTGTTTGGTGTAAACGTGCAGAGTTGTTTAAGAAATCGCCCACAAAAGGCATTAA
TGAAAATATGCTGCGAGATTTTATTTCCAGCGAAAAACAAGCTGATTTTCAACCGCACTTTGTGAAAGTAGATACTACTT
TAACTGTTCAAAAAACACCACAAGTGTATTGGATAACGCAAAGCCAATTAGAAATTAAAGGGAATGTGAGTGGTATTCTG
CTAGCAGAAGGAGATTTAAGTTTAATCGGCAAAGGGCGTATTAGCGGTGCTGTGATTACTGGAGGCTCTCTTAAGTTGGA
GGGAGGCGTGACGGTAGCTTACGGTAAAGCCGTGGTGACAAAACTCGTACAAGAATATAGCCAATGGCGTTTGGTGGATA
AAAGTTGGAGTGATTTGAGTGCGCAAGATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(3-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

53.097

100

0.531