Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDN84_RS18195 Genome accession   NZ_AP024238
Coordinates   3922100..3922609 (-) Length   169 a.a.
NCBI ID   WP_223904837.1    Uniprot ID   -
Organism   Rhodoferax lithotrophicus strain MIZ03     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3917100..3927609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDN84_RS18170 (MIZ03_3835) - 3917493..3918398 (+) 906 WP_223913116.1 DMT family transporter -
  LDN84_RS18175 (MIZ03_3836) - 3918395..3919597 (+) 1203 WP_223904833.1 PLP-dependent aminotransferase family protein -
  LDN84_RS18180 (MIZ03_3837) - 3919600..3920217 (+) 618 WP_223904834.1 glutathione S-transferase -
  LDN84_RS18185 (MIZ03_3838) - 3920243..3921217 (+) 975 WP_223904835.1 PhzF family phenazine biosynthesis protein -
  LDN84_RS18190 (MIZ03_3839) - 3921291..3921959 (+) 669 WP_223904836.1 histidine phosphatase family protein -
  LDN84_RS18195 (MIZ03_3840) ssb 3922100..3922609 (-) 510 WP_223904837.1 single-stranded DNA-binding protein Machinery gene
  LDN84_RS18200 (MIZ03_3841) - 3922680..3923870 (-) 1191 WP_223913119.1 MFS transporter -
  LDN84_RS18205 (MIZ03_3842) - 3924152..3926509 (+) 2358 WP_223904838.1 transglycosylase domain-containing protein -
  LDN84_RS18210 (MIZ03_3844) - 3926881..3927195 (+) 315 WP_223904839.1 NIPSNAP family protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18329.58 Da        Isoelectric Point: 5.9650

>NTDB_id=84227 LDN84_RS18195 WP_223904837.1 3922100..3922609(-) (ssb) [Rhodoferax lithotrophicus strain MIZ03]
MASVNKVILLGNLGRDPEVRYLPSGDPVANITIATSSRFKGKTGEMVEETEWHRVTFFGRLAEIASQYLKKGRPVYVEGR
IKTNKYTDKNGVERYSTDIIASEMQLLGGREGMGEPSQGDDDGGYSRQAPAPRPAAAQRPAAPMRQAPAAAPAARPASGF
DDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=84227 LDN84_RS18195 WP_223904837.1 3922100..3922609(-) (ssb) [Rhodoferax lithotrophicus strain MIZ03]
ATGGCATCTGTAAACAAAGTGATTTTGCTGGGCAATCTGGGGCGTGACCCTGAAGTGCGCTATCTGCCCAGTGGTGACCC
GGTGGCCAACATCACCATTGCCACCAGCAGCCGCTTCAAAGGCAAAACCGGTGAAATGGTGGAAGAAACCGAATGGCACC
GCGTGACCTTTTTTGGTCGCCTGGCTGAAATTGCCAGCCAGTACCTGAAAAAAGGCCGCCCGGTGTATGTGGAAGGCCGT
ATCAAAACCAACAAGTACACCGACAAAAACGGTGTGGAACGTTATTCCACCGACATCATTGCCAGCGAAATGCAATTGCT
CGGCGGCCGTGAAGGCATGGGCGAGCCCAGCCAGGGTGATGACGATGGTGGCTACAGCCGCCAGGCACCCGCCCCGCGTC
CTGCCGCAGCGCAGCGCCCGGCTGCACCCATGCGCCAAGCACCTGCCGCAGCCCCGGCGGCCCGTCCCGCCAGCGGTTTT
GATGACATGGATGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.527
  ssb Neisseria meningitidis MC58

50.282

100

0.527
  ssb Vibrio cholerae strain A1552

48.619

100

0.521
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.509

Multiple sequence alignment