Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QN079_RS10075 Genome accession   NZ_CP127160
Coordinates   2073513..2073983 (-) Length   156 a.a.
NCBI ID   WP_289229671.1    Uniprot ID   -
Organism   Enterococcus sp. FZMF     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2068513..2078983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QN079_RS10015 (QN079_10015) - 2069213..2069626 (-) 414 WP_289229662.1 integrase -
  QN079_RS10020 (QN079_10020) - 2069716..2069910 (-) 195 WP_289229663.1 hypothetical protein -
  QN079_RS10025 (QN079_10025) - 2069913..2070101 (-) 189 WP_289229664.1 hypothetical protein -
  QN079_RS10030 (QN079_10030) - 2070091..2070528 (-) 438 WP_289229665.1 YopX family protein -
  QN079_RS10035 (QN079_10035) - 2070573..2070833 (+) 261 WP_142974169.1 hypothetical protein -
  QN079_RS10040 (QN079_10040) - 2070870..2071142 (-) 273 WP_123836405.1 hypothetical protein -
  QN079_RS10045 (QN079_10045) - 2071115..2071483 (-) 369 WP_289229666.1 hypothetical protein -
  QN079_RS10050 (QN079_10050) - 2071849..2072073 (-) 225 WP_270788439.1 hypothetical protein -
  QN079_RS10055 (QN079_10055) - 2072107..2072418 (-) 312 WP_289229667.1 hypothetical protein -
  QN079_RS10060 (QN079_10060) - 2072418..2072651 (-) 234 WP_289229668.1 hypothetical protein -
  QN079_RS10065 (QN079_10065) - 2072648..2073199 (-) 552 WP_289229669.1 DUF1642 domain-containing protein -
  QN079_RS10070 (QN079_10070) - 2073177..2073338 (-) 162 WP_289229670.1 hypothetical protein -
  QN079_RS10075 (QN079_10075) ssbA 2073513..2073983 (-) 471 WP_289229671.1 single-stranded DNA-binding protein Machinery gene
  QN079_RS10080 (QN079_10080) - 2073980..2074321 (-) 342 WP_289229672.1 VRR-NUC domain-containing protein -
  QN079_RS10085 (QN079_10085) - 2074318..2074566 (-) 249 WP_289229673.1 hypothetical protein -
  QN079_RS10090 (QN079_10090) - 2074567..2075805 (-) 1239 WP_289229674.1 DnaB-like helicase C-terminal domain-containing protein -
  QN079_RS10095 (QN079_10095) - 2075795..2076598 (-) 804 WP_195960522.1 phage replisome organizer N-terminal domain-containing protein -
  QN079_RS10100 (QN079_10100) - 2076600..2077094 (-) 495 WP_289229675.1 hypothetical protein -
  QN079_RS10105 (QN079_10105) - 2077097..2077819 (-) 723 WP_289229676.1 putative HNHc nuclease -
  QN079_RS10110 (QN079_10110) - 2077825..2078469 (-) 645 WP_289229677.1 ERF family protein -
  QN079_RS10115 (QN079_10115) - 2078466..2078795 (-) 330 WP_289229678.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17232.86 Da        Isoelectric Point: 4.8893

>NTDB_id=842146 QN079_RS10075 WP_289229671.1 2073513..2073983(-) (ssbA) [Enterococcus sp. FZMF]
MINNLTLVGRLTKDPDLKYTGNGTAVATFTLAVNRNFTNQSGEREADFINCVIWRKPAETLANYAKKGVLIGVTGRIQTR
SYDNQQGQKVYVTEVIADNFQLLESKKADSSQNTQGSGVSNGQTNNYTRSQQNRNNDESDPFGNSSIDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=842146 QN079_RS10075 WP_289229671.1 2073513..2073983(-) (ssbA) [Enterococcus sp. FZMF]
ATGATAAACAATTTAACTTTGGTCGGAAGACTAACGAAAGATCCGGATTTGAAATATACAGGCAACGGAACCGCAGTTGC
CACCTTCACATTAGCTGTGAATCGCAACTTCACGAATCAGAGCGGAGAGCGAGAAGCGGACTTCATCAACTGCGTGATTT
GGAGAAAGCCAGCTGAAACATTAGCGAACTATGCGAAAAAAGGCGTGTTGATCGGAGTGACGGGGCGGATTCAAACTCGT
TCTTACGATAACCAACAAGGACAAAAAGTTTATGTCACCGAAGTGATTGCGGACAACTTCCAGTTGTTAGAAAGCAAGAA
AGCCGATTCTAGCCAAAATACACAAGGTAGCGGCGTTTCAAATGGTCAAACGAATAATTACACTCGCAGCCAACAAAACC
GCAACAACGATGAATCAGACCCATTTGGTAACTCGTCTATTGATATCAGCGATGACGACTTACCATTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.647
  ssb Latilactobacillus sakei subsp. sakei 23K

58.14

100

0.641
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.407

72.436

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

53.774

67.949

0.365