Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U9988_RS03590 Genome accession   NZ_CP142723
Coordinates   746196..746693 (+) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain LXZ1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 741196..751693
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9988_RS03575 bfr 741205..741669 (+) 465 WP_003093668.1 bacterioferritin -
  U9988_RS03580 uvrA 741740..744577 (-) 2838 WP_003093663.1 excinuclease ABC subunit UvrA Machinery gene
  U9988_RS03585 - 744791..746179 (+) 1389 WP_003103910.1 MFS transporter -
  U9988_RS03590 ssb 746196..746693 (+) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  U9988_RS03595 pchA 746782..748212 (-) 1431 WP_003114686.1 isochorismate synthase PchA -
  U9988_RS03600 pchB 748209..748514 (-) 306 WP_003106950.1 isochorismate lyase PchB -
  U9988_RS03605 pchC 748514..749269 (-) 756 WP_014602458.1 pyochelin biosynthesis editing thioesterase PchC -
  U9988_RS03610 pchD 749266..750909 (-) 1644 WP_003114688.1 pyochelin biosynthesis salicyl-AMP ligase PchD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=841871 U9988_RS03590 WP_003114685.1 746196..746693(+) (ssb) [Pseudomonas aeruginosa strain LXZ1]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=841871 U9988_RS03590 WP_003114685.1 746196..746693(+) (ssb) [Pseudomonas aeruginosa strain LXZ1]
ATGGCCCGTGGGGTTAACAAAGTCATTCTAGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACCCGCAAGTGGCAGGGCCAGGATGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGATTCGCAGCGCGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAACCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515