Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   QQO14_RS06670 Genome accession   NZ_CP127096
Coordinates   1332343..1332663 (+) Length   106 a.a.
NCBI ID   WP_285489772.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain M1691_10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327343..1337663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQO14_RS06640 - 1328130..1328333 (+) 204 WP_037536577.1 YqgQ family protein -
  QQO14_RS06645 - 1328330..1329316 (+) 987 WP_037536575.1 ROK family glucokinase -
  QQO14_RS06650 - 1329316..1329639 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  QQO14_RS06655 - 1329641..1330267 (+) 627 WP_285489767.1 MBL fold metallo-hydrolase -
  QQO14_RS06660 comGA 1330319..1331293 (+) 975 WP_285489768.1 competence type IV pilus ATPase ComGA Machinery gene
  QQO14_RS06665 comGB 1331265..1332329 (+) 1065 WP_285489770.1 competence type IV pilus assembly protein ComGB -
  QQO14_RS06670 comGC 1332343..1332663 (+) 321 WP_285489772.1 competence type IV pilus major pilin ComGC Machinery gene
  QQO14_RS06675 comGD 1332644..1333096 (+) 453 WP_285491733.1 competence type IV pilus minor pilin ComGD -
  QQO14_RS06680 - 1333944..1334462 (+) 519 WP_053018273.1 shikimate kinase -
  QQO14_RS06685 gcvT 1334651..1335742 (+) 1092 WP_037536557.1 glycine cleavage system aminomethyltransferase GcvT -
  QQO14_RS06690 gcvPA 1335759..1337111 (+) 1353 WP_053017335.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11830.89 Da        Isoelectric Point: 8.5328

>NTDB_id=841745 QQO14_RS06670 WP_285489772.1 1332343..1332663(+) (comGC) [Staphylococcus haemolyticus strain M1691_10]
MKNHFENFKKLKGFTLIEMLLVLLIISVLLILIIPNIAKQTVHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=841745 QQO14_RS06670 WP_285489772.1 1332343..1332663(+) (comGC) [Staphylococcus haemolyticus strain M1691_10]
ATGAAGAATCACTTTGAAAATTTTAAAAAGTTAAAAGGTTTTACTTTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGTTCATATCCAGTCCACAGGTTGTGAAGCCCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGAACACCTTCTAATATAAATGATCTTATAAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACAATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

80.392

96.226

0.774
  comGC Staphylococcus aureus N315

80.392

96.226

0.774
  comYC Streptococcus gordonii str. Challis substr. CH1

42

94.34

0.396
  comGC/cglC Streptococcus mitis SK321

48.148

76.415

0.368
  comGC/cglC Streptococcus mitis NCTC 12261

48.148

76.415

0.368
  comGC Bacillus subtilis subsp. subtilis str. 168

42.857

85.849

0.368