Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   LLC_RS11780 Genome accession   NZ_AP024222
Coordinates   2305400..2306383 (+) Length   327 a.a.
NCBI ID   WP_032950503.1    Uniprot ID   A0A1V0PIB8
Organism   Lactococcus cremoris strain EPSC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2300400..2311383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLC_RS11760 (LLC_24280) - 2300467..2301303 (-) 837 WP_011676728.1 Cof-type HAD-IIB family hydrolase -
  LLC_RS11765 (LLC_24290) - 2301609..2303030 (+) 1422 WP_126354756.1 NCS2 family permease -
  LLC_RS14510 (LLC_24300) - 2303223..2303459 (+) 237 WP_250638220.1 alpha/beta hydrolase -
  LLC_RS11770 (LLC_24310) - 2303498..2304085 (+) 588 WP_250638196.1 alpha/beta hydrolase -
  LLC_RS11775 (LLC_24320) - 2304240..2305325 (+) 1086 WP_061777780.1 YdcF family protein -
  LLC_RS11780 (LLC_24330) coiA 2305400..2306383 (+) 984 WP_032950503.1 competence protein CoiA Machinery gene
  LLC_RS11785 (LLC_24340) pepF 2306458..2308263 (+) 1806 WP_021165608.1 oligoendopeptidase F Regulator
  LLC_RS11790 (LLC_24350) - 2308266..2308949 (+) 684 WP_011676723.1 O-methyltransferase -
  LLC_RS11795 (LLC_24360) - 2309105..2310028 (+) 924 WP_061777779.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 39121.86 Da        Isoelectric Point: 9.7664

>NTDB_id=84157 LLC_RS11780 WP_032950503.1 2305400..2306383(+) (coiA) [Lactococcus cremoris strain EPSC]
MLTAIDENNKIINLLELERKELTGKFYCPSCHAELLIKNGQIKVLHFAHKSLKSCNLWLENESEQHLGLKKILYQWFKRT
DKVEIERYLPELNQRPDLLVNDKIAIEIQCSHLSIKRLKERTENYKAHGFKVLWLMGKDLWLAEQVTKLQKNLVYFSENR
GFFYWELDFQRKKLRLKSLIHEDLRGRIICLQEEIPFGKGRLIAHLRLPYLAQKLVKIPTFKDPKLSSFIRQQLYYQSPK
WMKIQEKYYQKGENLLTKKFEGPYIAPLGLNLLESFTDEMTITTFTQIDQNVKLYYENFLINFQRNSLEMLYPPCFYAIM
GKQKKEK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=84157 LLC_RS11780 WP_032950503.1 2305400..2306383(+) (coiA) [Lactococcus cremoris strain EPSC]
ATGCTGACAGCAATTGATGAAAATAATAAAATAATAAACTTACTGGAATTAGAACGCAAAGAATTGACCGGGAAATTTTA
TTGTCCTTCTTGTCATGCAGAGCTACTTATTAAAAATGGGCAGATAAAAGTTCTTCATTTTGCCCATAAATCTCTAAAGA
GCTGCAATTTATGGTTGGAAAATGAGTCAGAACAGCATTTAGGTTTGAAAAAAATATTATATCAGTGGTTTAAAAGGACT
GACAAAGTCGAAATTGAACGCTATTTGCCCGAACTTAACCAAAGACCAGATTTATTAGTAAATGACAAAATCGCTATTGA
GATACAATGCTCTCATTTATCTATTAAGCGCCTCAAAGAACGTACAGAAAATTATAAGGCGCATGGCTTTAAAGTGCTTT
GGTTGATGGGAAAGGATTTATGGCTGGCTGAACAGGTGACAAAACTTCAAAAAAATTTAGTTTATTTCTCGGAAAATAGA
GGATTCTTTTATTGGGAGTTAGATTTTCAGAGGAAAAAATTAAGATTAAAATCTCTTATTCATGAGGATTTACGCGGCAG
AATCATTTGCTTACAAGAGGAAATTCCTTTTGGAAAAGGACGACTTATTGCGCATCTACGCTTACCTTATTTGGCGCAAA
AACTGGTGAAAATTCCTACTTTTAAAGATCCTAAACTTTCTAGTTTTATTCGTCAGCAATTATACTATCAATCACCAAAA
TGGATGAAAATTCAAGAAAAATATTATCAAAAAGGAGAAAATTTACTGACGAAAAAATTTGAAGGTCCATACATTGCTCC
ACTAGGTTTAAATTTACTAGAGAGTTTTACTGACGAAATGACGATCACAACTTTTACTCAGATTGATCAAAATGTTAAGC
TTTACTATGAAAATTTTTTAATAAATTTCCAAAGAAATAGCCTTGAAATGCTCTATCCTCCCTGTTTCTATGCTATAATG
GGAAAGCAGAAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V0PIB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

97.248

100

0.972
  coiA Streptococcus mitis NCTC 12261

44.444

99.083

0.44
  coiA Streptococcus pneumoniae TIGR4

43.21

99.083

0.428
  coiA Streptococcus pneumoniae Rx1

43.21

99.083

0.428
  coiA Streptococcus pneumoniae D39

43.21

99.083

0.428
  coiA Streptococcus pneumoniae R6

43.21

99.083

0.428

Multiple sequence alignment