Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | QP019_RS11310 | Genome accession | NZ_CP126978 |
| Coordinates | 2344551..2345066 (+) | Length | 171 a.a. |
| NCBI ID | WP_018347305.1 | Uniprot ID | A0A0A3A3X9 |
| Organism | Gallibacterium anatis strain YJ922 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2344551..2366686 | 2344551..2345066 | within | 0 |
Gene organization within MGE regions
Location: 2344551..2366686
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QP019_RS11310 (QP019_11310) | ssb | 2344551..2345066 (+) | 516 | WP_018347305.1 | single-stranded DNA-binding protein | Machinery gene |
| QP019_RS11315 (QP019_11315) | - | 2345163..2346050 (-) | 888 | WP_285096244.1 | LysR family transcriptional regulator | - |
| QP019_RS11320 (QP019_11320) | - | 2346165..2347007 (+) | 843 | WP_285096245.1 | aldo/keto reductase | - |
| QP019_RS11325 (QP019_11325) | - | 2347195..2347716 (+) | 522 | WP_285096246.1 | agmatine deiminase family protein | - |
| QP019_RS11330 (QP019_11330) | - | 2347977..2349212 (+) | 1236 | WP_285096247.1 | SIR2 family protein | - |
| QP019_RS11335 (QP019_11335) | - | 2349209..2350933 (+) | 1725 | WP_285096248.1 | ATP-binding protein | - |
| QP019_RS11340 (QP019_11340) | - | 2351133..2352623 (-) | 1491 | WP_285096249.1 | class I SAM-dependent DNA methyltransferase | - |
| QP019_RS11345 (QP019_11345) | - | 2352771..2354228 (-) | 1458 | WP_285096250.1 | RNA-binding domain-containing protein | - |
| QP019_RS11350 (QP019_11350) | - | 2354382..2354549 (-) | 168 | WP_155275119.1 | hypothetical protein | - |
| QP019_RS11355 (QP019_11355) | - | 2354546..2355964 (-) | 1419 | WP_285096251.1 | restriction endonuclease subunit S | - |
| QP019_RS11360 (QP019_11360) | - | 2355995..2357119 (-) | 1125 | WP_039152806.1 | Fic family protein | - |
| QP019_RS11365 (QP019_11365) | - | 2357300..2360143 (-) | 2844 | WP_285096252.1 | DEAD/DEAH box helicase family protein | - |
| QP019_RS11370 (QP019_11370) | - | 2360445..2360981 (+) | 537 | WP_285096253.1 | hypothetical protein | - |
| QP019_RS11375 (QP019_11375) | - | 2361032..2361337 (+) | 306 | WP_285096254.1 | transposase | - |
| QP019_RS11380 (QP019_11380) | - | 2361321..2362169 (+) | 849 | WP_285096255.1 | IS3 family transposase | - |
| QP019_RS11385 (QP019_11385) | - | 2362357..2363361 (-) | 1005 | WP_285096256.1 | virulence RhuM family protein | - |
| QP019_RS11390 (QP019_11390) | - | 2363911..2364216 (+) | 306 | WP_013744838.1 | IS3 family transposase | - |
| QP019_RS11395 (QP019_11395) | - | 2364219..2365049 (+) | 831 | Protein_2199 | IS3 family transposase | - |
| QP019_RS11400 (QP019_11400) | - | 2365086..2366198 (+) | 1113 | WP_285096257.1 | alpha/beta fold hydrolase | - |
| QP019_RS11405 (QP019_11405) | - | 2366227..2366686 (-) | 460 | Protein_2201 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19146.28 Da Isoelectric Point: 4.9833
>NTDB_id=840993 QP019_RS11310 WP_018347305.1 2344551..2345066(+) (ssb) [Gallibacterium anatis strain YJ922]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF
Nucleotide
Download Length: 516 bp
>NTDB_id=840993 QP019_RS11310 WP_018347305.1 2344551..2345066(+) (ssb) [Gallibacterium anatis strain YJ922]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACTTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGTTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGTATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACAGCGGATTTTGATGATGATATGCCGTTCTAA
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACTTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGTTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGTATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCCAAAGCACCGCAAGCAGCGGTAAATCCG
GATACAGCGGATTTTGATGATGATATGCCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
64.286 |
100 |
0.684 |
| ssb | Vibrio cholerae strain A1552 |
52 |
100 |
0.532 |
| ssb | Neisseria meningitidis MC58 |
42.938 |
100 |
0.444 |
| ssb | Neisseria gonorrhoeae MS11 |
43.103 |
100 |
0.439 |