Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QP019_RS07740 Genome accession   NZ_CP126978
Coordinates   1569541..1570002 (-) Length   153 a.a.
NCBI ID   WP_039148357.1    Uniprot ID   A0A0A2Y1P5
Organism   Gallibacterium anatis strain YJ922     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564541..1575002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP019_RS07705 (QP019_07705) - 1564891..1565022 (-) 132 WP_285095948.1 hypothetical protein -
  QP019_RS07710 (QP019_07710) - 1565053..1565325 (-) 273 WP_039084192.1 GNAT family N-acetyltransferase -
  QP019_RS07715 (QP019_07715) yacG 1565407..1565625 (-) 219 WP_285095949.1 DNA gyrase inhibitor YacG -
  QP019_RS07720 (QP019_07720) coaE 1565615..1566247 (-) 633 WP_285095950.1 dephospho-CoA kinase -
  QP019_RS07725 (QP019_07725) - 1566262..1566894 (-) 633 WP_230589045.1 prepilin peptidase -
  QP019_RS07730 (QP019_07730) - 1566891..1568099 (-) 1209 WP_285095951.1 type II secretion system F family protein -
  QP019_RS07735 (QP019_07735) pilB 1568115..1569524 (-) 1410 WP_285095953.1 GspE/PulE family protein Machinery gene
  QP019_RS07740 (QP019_07740) pilA 1569541..1570002 (-) 462 WP_039148357.1 prepilin peptidase-dependent pilin Machinery gene
  QP019_RS07745 (QP019_07745) ampD 1570107..1570661 (+) 555 WP_285095954.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QP019_RS07750 (QP019_07750) - 1570748..1571083 (+) 336 WP_013746603.1 hypothetical protein -
  QP019_RS07755 (QP019_07755) - 1571192..1572586 (+) 1395 WP_094933117.1 chloride channel protein -
  QP019_RS07760 (QP019_07760) dusA 1572567..1573547 (+) 981 WP_285095955.1 tRNA dihydrouridine(20/20a) synthase DusA -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16374.72 Da        Isoelectric Point: 8.0868

>NTDB_id=840984 QP019_RS07740 WP_039148357.1 1569541..1570002(-) (pilA) [Gallibacterium anatis strain YJ922]
MKKREQLKANYAGFTLIELMIVIAIIAVLATIAIPSYQNYTKKAAISELIQASSPYKAEVELCIYNTKSKASCNAGQNGI
QAKPSNMDKFKYLKEVNVAAGVISVSGKSSLENISYTMTPSDGNNGELIDWSVTCSGDNGLFPAGFCSNTSAN

Nucleotide


Download         Length: 462 bp        

>NTDB_id=840984 QP019_RS07740 WP_039148357.1 1569541..1570002(-) (pilA) [Gallibacterium anatis strain YJ922]
ATGAAAAAACGTGAACAACTAAAGGCGAATTATGCCGGATTTACTTTAATTGAATTGATGATCGTCATTGCGATTATTGC
CGTGTTGGCAACCATTGCCATTCCCTCTTATCAAAATTACACCAAAAAGGCGGCAATATCAGAATTGATTCAGGCCTCCT
CACCCTATAAGGCGGAAGTTGAGCTCTGTATTTATAACACTAAGAGTAAAGCAAGCTGTAACGCCGGTCAAAACGGCATT
CAGGCGAAGCCGTCTAATATGGATAAATTTAAATATCTTAAAGAGGTTAATGTGGCTGCCGGTGTTATTTCTGTTTCCGG
TAAATCCAGTCTGGAGAACATCAGTTATACGATGACACCAAGTGATGGCAATAACGGTGAATTAATTGATTGGAGTGTAA
CTTGTAGCGGTGATAATGGGCTGTTTCCGGCAGGATTTTGTAGCAATACTTCTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2Y1P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

54

98.039

0.529
  pilA Haemophilus influenzae Rd KW20

52.667

98.039

0.516
  pilA Haemophilus influenzae 86-028NP

56.618

88.889

0.503