Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QP020_RS11290 Genome accession   NZ_CP126977
Coordinates   2378331..2378846 (+) Length   171 a.a.
NCBI ID   WP_018347305.1    Uniprot ID   A0A0A3A3X9
Organism   Gallibacterium anatis strain DFSO2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2373645..2383224 2378331..2378846 within 0


Gene organization within MGE regions


Location: 2373645..2383224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS11275 (QP020_11275) - 2373645..2374163 (-) 519 WP_052124464.1 Panacea domain-containing protein -
  QP020_RS11280 (QP020_11280) - 2374397..2374840 (-) 444 WP_285098133.1 hypothetical protein -
  QP020_RS11285 (QP020_11285) uvrA 2375355..2378189 (-) 2835 WP_039153367.1 excinuclease ABC subunit UvrA -
  QP020_RS11290 (QP020_11290) ssb 2378331..2378846 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  QP020_RS11295 (QP020_11295) - 2378942..2379484 (-) 543 WP_285098135.1 LysR substrate-binding domain-containing protein -
  QP020_RS11300 (QP020_11300) - 2379518..2379952 (+) 435 Protein_2182 amidophosphoribosyltransferase -
  QP020_RS11305 (QP020_11305) - 2379952..2380527 (+) 576 WP_285098137.1 UbiX family flavin prenyltransferase -
  QP020_RS11310 (QP020_11310) - 2380891..2381301 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  QP020_RS11315 (QP020_11315) - 2381432..2382499 (+) 1068 WP_285098139.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
  QP020_RS11320 (QP020_11320) - 2382511..2383224 (+) 714 WP_021462087.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19146.28 Da        Isoelectric Point: 4.9833

>NTDB_id=840973 QP020_RS11290 WP_018347305.1 2378331..2378846(+) (ssb) [Gallibacterium anatis strain DFSO2]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPMAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=840973 QP020_RS11290 WP_018347305.1 2378331..2378846(+) (ssb) [Gallibacterium anatis strain DFSO2]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACCTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGCTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGCATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATGGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCACAACCGGCAGCCGCTAAAGCACCGCAAGCAGCGGTAAATCCG
GATACTGCGGATTTTGATGATGATATGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3A3X9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.286

100

0.684
  ssb Vibrio cholerae strain A1552

52

100

0.532
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.439