Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QP020_RS08695 Genome accession   NZ_CP126977
Coordinates   1836543..1836872 (+) Length   109 a.a.
NCBI ID   WP_013746361.1    Uniprot ID   F4HBV2
Organism   Gallibacterium anatis strain DFSO2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1831543..1841872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP020_RS08680 (QP020_08680) galU 1832426..1833313 (+) 888 WP_094933019.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QP020_RS08685 (QP020_08685) glpT 1833660..1835117 (+) 1458 WP_039133235.1 glycerol-3-phosphate transporter -
  QP020_RS08690 (QP020_08690) glpQ 1835256..1836350 (+) 1095 WP_285097762.1 glycerophosphodiester phosphodiesterase -
  QP020_RS08695 (QP020_08695) comEA/comE1 1836543..1836872 (+) 330 WP_013746361.1 helix-hairpin-helix domain-containing protein Machinery gene
  QP020_RS08700 (QP020_08700) fis 1836954..1837250 (-) 297 WP_013746362.1 DNA-binding transcriptional regulator Fis -
  QP020_RS08705 (QP020_08705) dusB 1837279..1838253 (-) 975 WP_285097764.1 tRNA dihydrouridine synthase DusB -
  QP020_RS08710 (QP020_08710) - 1838580..1841621 (+) 3042 WP_285097766.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11558.21 Da        Isoelectric Point: 7.2030

>NTDB_id=840966 QP020_RS08695 WP_013746361.1 1836543..1836872(+) (comEA/comE1) [Gallibacterium anatis strain DFSO2]
MKLKHLFALTFGSLALLSGSVAVAESANPPPATETAQLQQAAQSDKVNLNTATAEQLQKGLVGIGAKKAQAIVEYREQHG
PFVSVEQITEVKGIGSAIFEKNKDRLAIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=840966 QP020_RS08695 WP_013746361.1 1836543..1836872(+) (comEA/comE1) [Gallibacterium anatis strain DFSO2]
ATGAAATTAAAACATTTATTTGCGTTAACTTTCGGTTCACTAGCACTGTTGTCCGGTTCGGTTGCGGTAGCGGAAAGCGC
CAATCCGCCGCCGGCAACTGAAACGGCACAACTCCAACAGGCGGCACAGAGCGATAAAGTGAATTTAAATACTGCCACTG
CTGAACAGTTACAGAAAGGATTGGTCGGTATTGGTGCGAAAAAGGCACAGGCGATTGTCGAGTATCGTGAGCAGCACGGG
CCGTTTGTTTCTGTGGAACAGATTACCGAAGTAAAAGGAATCGGTTCAGCTATTTTTGAAAAAAATAAAGATCGTCTAGC
GATTGAATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F4HBV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

48.649

100

0.495
  comE1/comEA Haemophilus influenzae Rd KW20

48.182

100

0.486
  comEA Acinetobacter baylyi ADP1

39.535

100

0.468
  comEA Bacillus subtilis subsp. subtilis str. 168

46.067

81.651

0.376