Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QP018_RS12225 Genome accession   NZ_CP126975
Coordinates   2579398..2579913 (+) Length   171 a.a.
NCBI ID   WP_039159611.1    Uniprot ID   A0AAX3XBA4
Organism   Gallibacterium anatis strain BJF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2574706..2584291 2579398..2579913 within 0


Gene organization within MGE regions


Location: 2574706..2584291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS12210 (QP018_12210) - 2574706..2575224 (-) 519 WP_052124464.1 Panacea domain-containing protein -
  QP018_RS12215 (QP018_12215) - 2575334..2575912 (-) 579 WP_285092852.1 hypothetical protein -
  QP018_RS12220 (QP018_12220) uvrA 2576422..2579256 (-) 2835 WP_039146485.1 excinuclease ABC subunit UvrA -
  QP018_RS12225 (QP018_12225) ssb 2579398..2579913 (+) 516 WP_039159611.1 single-stranded DNA-binding protein Machinery gene
  QP018_RS12230 (QP018_12230) - 2580009..2580551 (-) 543 WP_285092856.1 LysR substrate-binding domain-containing protein -
  QP018_RS12235 (QP018_12235) - 2580585..2581019 (+) 435 Protein_2371 amidophosphoribosyltransferase -
  QP018_RS12240 (QP018_12240) - 2581019..2581594 (+) 576 WP_285092858.1 UbiX family flavin prenyltransferase -
  QP018_RS12245 (QP018_12245) - 2581958..2582368 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  QP018_RS12250 (QP018_12250) - 2582499..2583566 (+) 1068 WP_264255310.1 DUF4433 domain-containing protein -
  QP018_RS12255 (QP018_12255) - 2583578..2584291 (+) 714 WP_021462087.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19128.25 Da        Isoelectric Point: 4.9833

>NTDB_id=840953 QP018_RS12225 WP_039159611.1 2579398..2579913(+) (ssb) [Gallibacterium anatis strain BJF12]
MAGVNKVIIVGNLGNDPELRTFANGDAVANISVATSERWQDKQSGEWREITEWHRIVLFRRLAEIAGQYLRKGSKVYIEG
KLRTRKWQDQNGQDRYTTEIQADTLQMLDSRSDRMGADMSAPIAQPQNQFAQPSYNQAAAQPNQFAQPAAAKAPQAAVNP
DTADFDDDMPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=840953 QP018_RS12225 WP_039159611.1 2579398..2579913(+) (ssb) [Gallibacterium anatis strain BJF12]
ATGGCAGGCGTTAATAAAGTAATTATTGTGGGAAATTTGGGAAATGATCCTGAATTGAGAACTTTTGCAAATGGCGATGC
GGTCGCCAATATCAGTGTTGCCACCAGTGAACGTTGGCAAGACAAACAGAGCGGAGAATGGCGAGAAATTACTGAATGGC
ACCGCATCGTGTTATTCCGCCGTTTGGCAGAAATCGCCGGACAATATTTGCGTAAAGGATCAAAAGTTTATATAGAAGGC
AAATTACGCACGCGTAAATGGCAAGATCAAAACGGGCAAGATCGTTACACCACCGAAATTCAAGCGGACACATTACAAAT
GTTGGACAGTCGCAGCGATCGTATGGGCGCGGATATGTCTGCACCAATAGCTCAACCGCAAAATCAGTTTGCGCAACCGT
CTTATAATCAAGCGGCAGCTCAACCTAACCAATTCGCTCAACCGGCAGCCGCTAAAGCACCGCAAGCAGCGGTAAATCCG
GATACTGCGGATTTTGATGATGATATGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

64.286

100

0.684
  ssb Vibrio cholerae strain A1552

51.429

100

0.526
  ssb Neisseria meningitidis MC58

42.938

100

0.444
  ssb Neisseria gonorrhoeae MS11

43.103

100

0.439