Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QP018_RS06010 Genome accession   NZ_CP126975
Coordinates   1230664..1231176 (-) Length   170 a.a.
NCBI ID   WP_285091788.1    Uniprot ID   A0AAX3XH32
Organism   Gallibacterium anatis strain BJF12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1225664..1236176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QP018_RS05980 (QP018_05980) gltS 1225813..1227018 (+) 1206 WP_000599533.1 sodium/glutamate symporter -
  QP018_RS05985 (QP018_05985) - 1227384..1228592 (-) 1209 WP_001339175.1 IS4-like element ISVsa5 family transposase -
  QP018_RS05990 (QP018_05990) - 1228652..1228993 (-) 342 WP_285097505.1 toprim domain-containing protein -
  QP018_RS05995 (QP018_05995) - 1229125..1229751 (+) 627 WP_110478422.1 hypothetical protein -
  QP018_RS06000 (QP018_06000) - 1229729..1230022 (-) 294 WP_065189242.1 hypothetical protein -
  QP018_RS06005 (QP018_06005) - 1230162..1230641 (-) 480 WP_285091790.1 hypothetical protein -
  QP018_RS06010 (QP018_06010) ssb 1230664..1231176 (-) 513 WP_285091788.1 single-stranded DNA-binding protein Machinery gene
  QP018_RS06015 (QP018_06015) - 1231354..1231545 (+) 192 WP_285091785.1 hypothetical protein -
  QP018_RS06020 (QP018_06020) - 1231533..1231784 (-) 252 WP_285091784.1 hypothetical protein -
  QP018_RS06025 (QP018_06025) - 1231968..1232459 (-) 492 WP_285091782.1 DUF3158 family protein -
  QP018_RS06030 (QP018_06030) - 1232500..1233252 (-) 753 WP_285091779.1 PFL_4669 family integrating conjugative element protein -
  QP018_RS06035 (QP018_06035) - 1233539..1234765 (-) 1227 WP_285091778.1 STY4528 family pathogenicity island replication protein -
  QP018_RS06040 (QP018_06040) - 1234928..1235479 (-) 552 WP_035688466.1 DUF2857 domain-containing protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19115.19 Da        Isoelectric Point: 5.2957

>NTDB_id=840941 QP018_RS06010 WP_285091788.1 1230664..1231176(-) (ssb) [Gallibacterium anatis strain BJF12]
MAGINKVIIVGNLGADPEVRTMPNGEAVANMSVATSESWTDKTTGEKRELTEWHRIVFYRRQAEIVGEYLRKGSKVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRPERYQAGQATQVGAAQQGRNQYAQQSQPAYQTPQTQTSASQPVPPPIPD
DGFDDVQIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=840941 QP018_RS06010 WP_285091788.1 1230664..1231176(-) (ssb) [Gallibacterium anatis strain BJF12]
ATGGCAGGGATTAATAAAGTGATTATCGTGGGGAATCTTGGTGCAGATCCTGAAGTGAGAACAATGCCGAATGGCGAAGC
TGTGGCGAATATGAGTGTGGCAACTAGCGAAAGTTGGACAGATAAAACGACAGGTGAAAAACGTGAATTAACGGAATGGC
ATCGGATTGTATTTTATCGTCGTCAAGCTGAGATTGTCGGCGAGTATTTACGCAAAGGCTCGAAAGTCTATGTCGAAGGG
CGACTAAGAACCCGTAAATGGCAAGACCAAAATGGGCAAGATCGATACACCACAGAAATCCAAGGCGATGTACTTCAAAT
GTTAGATAGCCGTCCTGAGCGCTATCAAGCAGGGCAGGCAACGCAAGTTGGAGCGGCACAACAAGGTCGTAATCAATATG
CGCAACAGAGTCAGCCTGCCTACCAAACACCACAAACTCAAACTTCAGCATCTCAGCCTGTACCACCGCCTATCCCTGAT
GATGGCTTTGACGATGTTCAGATTCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.749

100

0.665
  ssb Vibrio cholerae strain A1552

54.749

100

0.576
  ssb Neisseria meningitidis MC58

46.629

100

0.488
  ssb Neisseria gonorrhoeae MS11

46.552

100

0.476