Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | JG741_RS08990 | Genome accession | NZ_AP024210 |
| Coordinates | 1764536..1765036 (+) | Length | 166 a.a. |
| NCBI ID | WP_011677241.1 | Uniprot ID | A0A0M2ZSZ2 |
| Organism | Lactococcus cremoris strain G3-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1743802..1768911 | 1764536..1765036 | within | 0 |
Gene organization within MGE regions
Location: 1743802..1768911
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JG741_RS08845 (LLG32_18260) | - | 1743802..1744002 (-) | 201 | WP_021164829.1 | hypothetical protein | - |
| JG741_RS08850 (LLG32_18270) | - | 1744742..1745467 (-) | 726 | WP_126354613.1 | hypothetical protein | - |
| JG741_RS08855 (LLG32_18280) | - | 1745460..1746782 (-) | 1323 | WP_011835935.1 | AAA family ATPase | - |
| JG741_RS08860 (LLG32_18290) | - | 1747229..1747561 (-) | 333 | WP_011835936.1 | hypothetical protein | - |
| JG741_RS08865 (LLG32_18300) | - | 1747561..1748001 (-) | 441 | WP_126354615.1 | terminase small subunit | - |
| JG741_RS08870 (LLG32_18310) | - | 1748122..1748703 (-) | 582 | WP_126354617.1 | hypothetical protein | - |
| JG741_RS08875 (LLG32_18320) | - | 1749166..1750839 (-) | 1674 | WP_126354619.1 | hypothetical protein | - |
| JG741_RS08880 (LLG32_18330) | - | 1750948..1751277 (-) | 330 | WP_021212130.1 | hypothetical protein | - |
| JG741_RS08885 (LLG32_18340) | - | 1751264..1751458 (-) | 195 | WP_126354621.1 | hypothetical protein | - |
| JG741_RS14320 (LLG32_18350) | - | 1751455..1751709 (-) | 255 | WP_126354623.1 | hypothetical protein | - |
| JG741_RS08890 (LLG32_18360) | - | 1751706..1751945 (-) | 240 | WP_126354624.1 | hypothetical protein | - |
| JG741_RS08895 (LLG32_18370) | - | 1751982..1752263 (-) | 282 | WP_126354626.1 | hypothetical protein | - |
| JG741_RS08900 (LLG32_18380) | - | 1752256..1752492 (-) | 237 | WP_126354628.1 | hypothetical protein | - |
| JG741_RS08905 (LLG32_18390) | - | 1752489..1753010 (-) | 522 | WP_126354630.1 | hypothetical protein | - |
| JG741_RS08910 (LLG32_18400) | - | 1753014..1753208 (-) | 195 | WP_032951169.1 | DUF1655 domain-containing protein | - |
| JG741_RS08915 (LLG32_18410) | - | 1753327..1753512 (-) | 186 | WP_063282780.1 | helix-turn-helix domain-containing protein | - |
| JG741_RS08920 (LLG32_18420) | - | 1753595..1753921 (+) | 327 | WP_063282781.1 | hypothetical protein | - |
| JG741_RS08925 (LLG32_18430) | - | 1753997..1754245 (-) | 249 | WP_126354632.1 | hypothetical protein | - |
| JG741_RS08930 (LLG32_18440) | - | 1754249..1754446 (-) | 198 | WP_014573247.1 | hypothetical protein | - |
| JG741_RS08935 (LLG32_18450) | - | 1754706..1755092 (+) | 387 | WP_126354634.1 | helix-turn-helix domain-containing protein | - |
| JG741_RS08940 (LLG32_18460) | - | 1755102..1755641 (+) | 540 | WP_126354636.1 | hypothetical protein | - |
| JG741_RS08945 (LLG32_18470) | - | 1755962..1757146 (+) | 1185 | WP_126354638.1 | tyrosine-type recombinase/integrase | - |
| JG741_RS08950 (LLG32_18480) | - | 1757436..1757885 (+) | 450 | WP_011677249.1 | hypothetical protein | - |
| JG741_RS08955 (LLG32_18490) | - | 1757919..1758191 (-) | 273 | WP_011677248.1 | chorismate mutase | - |
| JG741_RS08960 (LLG32_18500) | - | 1758275..1758763 (+) | 489 | WP_011677247.1 | GAF domain-containing protein | - |
| JG741_RS08965 (LLG32_18510) | - | 1758795..1759436 (+) | 642 | WP_011677246.1 | phosphotransferase | - |
| JG741_RS08970 (LLG32_18520) | dnaX | 1759482..1761143 (+) | 1662 | WP_011677245.1 | DNA polymerase III subunit gamma/tau | - |
| JG741_RS08975 (LLG32_18530) | - | 1761177..1762643 (-) | 1467 | WP_021164830.1 | amino acid permease | - |
| JG741_RS08980 (LLG32_18540) | - | 1763165..1764019 (+) | 855 | WP_021164831.1 | undecaprenyl-diphosphate phosphatase | - |
| JG741_RS08985 (LLG32_18550) | rpsF | 1764213..1764506 (+) | 294 | WP_011677242.1 | 30S ribosomal protein S6 | - |
| JG741_RS08990 (LLG32_18560) | ssb | 1764536..1765036 (+) | 501 | WP_011677241.1 | single-stranded DNA-binding protein | Machinery gene |
| JG741_RS08995 (LLG32_18570) | rpsR | 1765208..1765453 (+) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| JG741_RS09000 (LLG32_18580) | - | 1765584..1766369 (+) | 786 | WP_021164832.1 | metallophosphoesterase | - |
| JG741_RS09005 (LLG32_18590) | - | 1766442..1766750 (-) | 309 | WP_011836103.1 | DUF960 domain-containing protein | - |
| JG741_RS09010 (LLG32_18600) | - | 1766789..1767637 (-) | 849 | WP_011677238.1 | MurR/RpiR family transcriptional regulator | - |
| JG741_RS09015 (LLG32_18610) | gnd | 1768006..1768911 (+) | 906 | WP_011677237.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18233.05 Da Isoelectric Point: 5.2166
>NTDB_id=84089 JG741_RS08990 WP_011677241.1 1764536..1765036(+) (ssb) [Lactococcus cremoris strain G3-2]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=84089 JG741_RS08990 WP_011677241.1 1764536..1765036(+) (ssb) [Lactococcus cremoris strain G3-2]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.884 |
100 |
0.62 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.395 |
100 |
0.584 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
33.898 |
100 |
0.361 |