Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   VKP39_RS06190 Genome accession   NZ_CP142353
Coordinates   1231752..1232417 (-) Length   221 a.a.
NCBI ID   WP_030126859.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain D641     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226752..1237417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP39_RS06185 (VKP39_06185) hpf 1231124..1231672 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VKP39_RS06190 (VKP39_06190) comFC/cflB 1231752..1232417 (-) 666 WP_030126859.1 ComF family protein Machinery gene
  VKP39_RS06195 (VKP39_06195) comFA/cflA 1232389..1233714 (-) 1326 WP_002988971.1 DEAD/DEAH box helicase Machinery gene
  VKP39_RS06200 (VKP39_06200) - 1233769..1234401 (+) 633 WP_002988970.1 YigZ family protein -
  VKP39_RS06205 (VKP39_06205) cysK 1234529..1235470 (+) 942 WP_002991877.1 cysteine synthase A -
  VKP39_RS06210 (VKP39_06210) - 1235488..1235865 (-) 378 WP_030126860.1 S1 RNA-binding domain-containing protein -
  VKP39_RS06215 (VKP39_06215) - 1235865..1237265 (-) 1401 WP_023079249.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25231.49 Da        Isoelectric Point: 9.3379

>NTDB_id=840431 VKP39_RS06190 WP_030126859.1 1231752..1232417(-) (comFC/cflB) [Streptococcus pyogenes strain D641]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPDCFRERQFNQVSAILEAANVSYLPLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=840431 VKP39_RS06190 WP_030126859.1 1231752..1232417(-) (comFC/cflB) [Streptococcus pyogenes strain D641]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGGCGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATTACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGATTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTGAGGCAGCTAATGTTAGCTACCTTCCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGCGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae D39

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae R6

42.081

100

0.421
  comFC/cflB Streptococcus pneumoniae TIGR4

42.081

100

0.421
  comFC/cflB Streptococcus mitis SK321

41.629

100

0.416
  comFC/cflB Streptococcus mitis NCTC 12261

41.176

100

0.412