Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OJF58_RS19840 Genome accession   NZ_CP126889
Coordinates   3973225..3973698 (+) Length   157 a.a.
NCBI ID   WP_300779476.1    Uniprot ID   -
Organism   MAG: Enhydrobacter sp. isolate bin_2004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3968225..3978698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJF58_RS19830 (OJF58_004033) - 3970923..3972170 (-) 1248 WP_300779474.1 MFS transporter -
  OJF58_RS19835 (OJF58_004034) - 3972441..3973106 (+) 666 WP_300779475.1 aspartate/glutamate racemase family protein -
  OJF58_RS19840 (OJF58_004035) ssb 3973225..3973698 (+) 474 WP_300779476.1 single-stranded DNA-binding protein Machinery gene
  OJF58_RS19845 (OJF58_004036) - 3973695..3974336 (-) 642 WP_300779477.1 HAD family phosphatase -
  OJF58_RS19850 (OJF58_004037) gyrA 3974586..3977318 (+) 2733 WP_300785324.1 DNA gyrase subunit A -
  OJF58_RS19855 (OJF58_004038) coaD 3977389..3977895 (+) 507 WP_300779478.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17151.14 Da        Isoelectric Point: 7.0231

>NTDB_id=840403 OJF58_RS19840 WP_300779476.1 3973225..3973698(+) (ssb) [MAG: Enhydrobacter sp. isolate bin_2004]
MAGSVNKVILIGNLGRDPEVRSMQDGRAMVNMSVATSDTWRDRQTGERKERTEWHRVVIFNEKLAEVAQKYVRKGSKVYV
EGQLSTRKWTDQSGQERYTTEVVIPRFSGALTMLDGRGGGAEVGSGGMEDEIAGGSSNGGRPASRAGKAELDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=840403 OJF58_RS19840 WP_300779476.1 3973225..3973698(+) (ssb) [MAG: Enhydrobacter sp. isolate bin_2004]
ATGGCGGGCAGTGTCAACAAGGTCATCCTGATCGGCAATCTCGGCCGCGACCCGGAAGTGAGGTCCATGCAGGACGGCAG
AGCCATGGTGAACATGTCGGTCGCGACGTCCGATACATGGCGCGATCGCCAGACGGGCGAACGCAAGGAGCGTACCGAGT
GGCACCGCGTGGTGATTTTCAACGAGAAGCTGGCCGAGGTGGCGCAGAAGTACGTGCGCAAAGGATCGAAGGTCTACGTC
GAAGGACAGCTCTCGACCCGCAAGTGGACCGACCAAAGCGGCCAGGAGCGCTATACGACGGAGGTCGTGATCCCGCGCTT
CAGCGGCGCGCTCACCATGCTCGACGGTCGCGGCGGCGGCGCTGAAGTCGGCAGCGGCGGCATGGAGGACGAAATCGCCG
GCGGTTCGTCGAACGGAGGCCGCCCGGCTTCGCGCGCCGGCAAGGCCGAGCTCGACGACGACATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.387

100

0.573
  ssb Vibrio cholerae strain A1552

51.445

100

0.567
  ssb Neisseria meningitidis MC58

41.899

100

0.478
  ssb Neisseria gonorrhoeae MS11

40.782

100

0.465