Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VKP38_RS03860 Genome accession   NZ_CP142352
Coordinates   730466..731428 (+) Length   320 a.a.
NCBI ID   WP_023079901.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 2907-97     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 725466..736428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS03835 (VKP38_03835) - 725470..726060 (+) 591 WP_002983984.1 serine hydrolase -
  VKP38_RS03840 (VKP38_03840) - 726174..727394 (-) 1221 WP_326612281.1 DUF3114 domain-containing protein -
  VKP38_RS03845 (VKP38_03845) queA 727401..728429 (-) 1029 WP_002995782.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  VKP38_RS03850 (VKP38_03850) nagB 728631..729335 (+) 705 WP_002995779.1 glucosamine-6-phosphate deaminase -
  VKP38_RS03855 (VKP38_03855) - 729454..730170 (+) 717 WP_002995774.1 pseudouridine synthase -
  VKP38_RS03860 (VKP38_03860) coiA 730466..731428 (+) 963 WP_023079901.1 competence protein CoiA Machinery gene
  VKP38_RS03865 (VKP38_03865) pepF 731441..733246 (+) 1806 WP_023079941.1 oligoendopeptidase F Regulator
  VKP38_RS03870 (VKP38_03870) - 733623..734819 (+) 1197 WP_023079899.1 OFA family MFS transporter -
  VKP38_RS03875 (VKP38_03875) - 734885..735592 (+) 708 WP_020837344.1 O-methyltransferase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37802.19 Da        Isoelectric Point: 10.2092

>NTDB_id=840318 VKP38_RS03860 WP_023079901.1 730466..731428(+) (coiA) [Streptococcus pyogenes strain 2907-97]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLPYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIEGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=840318 VKP38_RS03860 WP_023079901.1 730466..731428(+) (coiA) [Streptococcus pyogenes strain 2907-97]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGGACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCACAATATTATGGAAATGTTTCGATTACCTTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTGAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTATAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

39.329

100

0.403