Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VKP38_RS00670 Genome accession   NZ_CP142352
Coordinates   106502..106930 (+) Length   142 a.a.
NCBI ID   WP_002986548.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 2907-97     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101502..111930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP38_RS00650 (VKP38_00650) - 103833..104198 (+) 366 WP_002986560.1 DUF1033 family protein -
  VKP38_RS00655 (VKP38_00655) comGA 104291..105229 (+) 939 WP_023079010.1 competence type IV pilus ATPase ComGA Machinery gene
  VKP38_RS00660 (VKP38_00660) comGB 105165..106199 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  VKP38_RS00665 (VKP38_00665) comGC 106201..106527 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  VKP38_RS00670 (VKP38_00670) comGD 106502..106930 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD Machinery gene
  VKP38_RS00675 (VKP38_00675) comGE 106887..107171 (+) 285 WP_032465969.1 competence type IV pilus minor pilin ComGE Machinery gene
  VKP38_RS00680 (VKP38_00680) comGF 107164..107598 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  VKP38_RS00685 (VKP38_00685) comGG 107582..107908 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  VKP38_RS00690 (VKP38_00690) comGH 108006..108959 (+) 954 WP_023610878.1 class I SAM-dependent methyltransferase Machinery gene
  VKP38_RS00695 (VKP38_00695) - 109018..110214 (+) 1197 WP_010921803.1 acetate kinase -
  VKP38_RS00700 (VKP38_00700) - 110401..110709 (+) 309 Protein_91 hypothetical protein -
  VKP38_RS00705 (VKP38_00705) proC 110792..111562 (-) 771 WP_023610882.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16310.04 Da        Isoelectric Point: 10.3481

>NTDB_id=840277 VKP38_RS00670 WP_002986548.1 106502..106930(+) (comGD) [Streptococcus pyogenes strain 2907-97]
MKKPVLAIKAFTLLETLLSLSVMSFIILGLSVPVTKSYQKVEEHLFFSHFEHLYRHQQKLAILQQKQRVLDISSTKIVTE
GNSLTVPKSITVNHPYRLVIDQMGGNHSLAKIIFDMTDRRFKYQFYLGSGNYQKTSQSLHSP

Nucleotide


Download         Length: 429 bp        

>NTDB_id=840277 VKP38_RS00670 WP_002986548.1 106502..106930(+) (comGD) [Streptococcus pyogenes strain 2907-97]
ATGAAAAAGCCCGTCTTAGCAATTAAAGCTTTTACTTTGCTTGAAACTTTACTAAGTTTGTCAGTGATGAGTTTCATTAT
ATTGGGATTGTCTGTACCAGTGACAAAAAGCTATCAAAAAGTAGAAGAGCATCTGTTTTTTAGCCATTTTGAACATTTGT
ATCGACATCAGCAAAAGTTAGCCATATTACAGCAAAAACAGCGCGTCTTGGATATTTCTTCAACAAAAATTGTTACAGAA
GGTAATAGCCTGACAGTTCCTAAATCAATAACAGTGAATCATCCTTATCGGTTAGTTATTGATCAGATGGGAGGCAACCA
TTCCTTAGCTAAAATTATTTTTGACATGACTGATCGACGCTTTAAATACCAATTTTATCTAGGGAGTGGGAATTATCAAA
AAACAAGTCAAAGCTTACATAGCCCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD/cglD Streptococcus mitis NCTC 12261

40.441

95.775

0.387
  comGD Streptococcus gordonii str. Challis substr. CH1

40.458

92.254

0.373
  comGD/cglD Streptococcus mitis SK321

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae Rx1

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae D39

39.695

92.254

0.366
  comGD/cglD Streptococcus pneumoniae R6

39.695

92.254

0.366