Detailed information NTG0840177

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: VKP55_RS00585
• Genome accession: NZ_CP142351
• Coordinates: 94201..95199 (+)
• Length: 332 a.a.
• NCBI ID: WP_063629365.1
• Uniprot ID: -
• Organism: Streptococcus pyogenes strain SS1366
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 89201..100199

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VKP55_RS00565 (VKP55_00565)	-	90207..91625 (+)	1419	WP_109821005.1	hypothetical protein	-
VKP55_RS00570 (VKP55_00570)	purB	91645..92937 (+)	1293	WP_002986683.1	adenylosuccinate lyase	-
VKP55_RS00575 (VKP55_00575)	comR	93070..93981 (+)	912	WP_326674266.1	helix-turn-helix domain-containing protein	Regulator
VKP55_RS00580 (VKP55_00580)	comS	94072..94170 (+)	99	WP_020833188.1	quorum-sensing system DWW-type pheromone	Regulator
VKP55_RS00585 (VKP55_00585)	ruvB	94201..95199 (+)	999	WP_063629365.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VKP55_RS00590 (VKP55_00590)	-	95337..95774 (+)	438	WP_002994668.1	low molecular weight protein-tyrosine-phosphatase	-
VKP55_RS00595 (VKP55_00595)	-	95797..96198 (+)	402	WP_002986671.1	MORN repeat-containing protein	-
VKP55_RS00600 (VKP55_00600)	-	96195..97970 (+)	1776	WP_002987732.1	acyltransferase family protein	-

Sequence

Protein

• Length: 332 a.a.
• Molecular weight: 37533.05 Da
• Isoelectric Point: 5.3005

>NTDB_id=840177 VKP55_RS00585 WP_063629365.1 94201..95199(+) (ruvB) [Streptococcus pyogenes strain SS1366]
MARILDNNVMGNEEFSDRTLRPQYLHEYIGQDKVKEQFAIFIEAAKRRDESLDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAVEKAGDLVAILNELEPGDILFIDEIHRMPMSVEEVLYSAMEDFYIDIMIGAGDTSRSIHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYQEKDLTEIVERTATIFEIKIDHEAARKLACRSRGTPRIANRLLKRVRDYAQIIGDGIIT
AQITDRALTMLDVDREGLDYIDQKILRTMIEMYQGGPVGLGTLSVNIAEERNTVEEVYEPYLIQKGFLMRTRTGRVATQK
AYRHLGYPYQNT

Nucleotide

• Length: 999 bp

>NTDB_id=840177 VKP55_RS00585 WP_063629365.1 94201..95199(+) (ruvB) [Streptococcus pyogenes strain SS1366]
ATGGCTAGAATTTTAGACAATAATGTAATGGGAAATGAGGAGTTTTCGGATCGGACTCTTCGCCCTCAATATCTACACGA
ATATATTGGACAAGATAAAGTTAAGGAACAATTCGCTATTTTTATAGAAGCAGCTAAAAGACGTGACGAATCTTTAGACC
ATGTTTTATTATTTGGACCTCCAGGACTGGGAAAAACAACAATGGCATTTGTGATTGCCAATGAATTGGGAGTTAATTTA
AAGCAAACTTCAGGTCCTGCCGTTGAGAAAGCTGGAGATTTGGTAGCTATTTTAAATGAATTAGAACCAGGGGATATTTT
GTTTATTGATGAAATTCACCGCATGCCAATGTCTGTCGAGGAAGTGCTATATAGTGCTATGGAAGACTTCTATATTGATA
TTATGATTGGCGCTGGAGATACTAGTCGTAGTATTCATTTGGATCTGCCTCCATTTACATTGATTGGTGCTACTACACGT
GCAGGCATGTTATCTAATCCCCTCAGAGCTCGTTTTGGTATCACTGGTCACATGGAATACTATCAAGAAAAGGATTTGAC
AGAGATTGTGGAGCGTACAGCTACTATTTTTGAAATAAAAATAGACCATGAAGCTGCACGGAAATTAGCTTGTCGCAGTA
GAGGAACGCCCCGCATTGCTAATCGATTACTAAAACGAGTGCGTGACTATGCTCAAATTATTGGTGATGGCATCATAACG
GCTCAAATAACTGATAGAGCTTTGACTATGTTAGATGTTGACCGCGAAGGTCTCGATTACATTGATCAGAAAATTTTACG
AACGATGATTGAGATGTATCAGGGAGGACCAGTTGGTTTGGGGACATTATCTGTGAATATTGCCGAGGAGCGTAATACAG
TTGAAGAGGTGTATGAACCCTACTTAATTCAAAAAGGCTTTCTCATGCGAACACGAACAGGTCGTGTAGCGACGCAAAAG
GCTTATCGTCATCTTGGCTATCCCTATCAAAACACTTAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae R6	84.545	99.398	0.84
ruvB	Streptococcus pneumoniae D39	84.545	99.398	0.84
ruvB	Streptococcus pneumoniae TIGR4	84.242	99.398	0.837
ruvB	Bacillus subtilis subsp. subtilis str. 168	59.133	97.289	0.575
ruvB	Helicobacter pylori 26695	49.24	99.096	0.488
ruvB	Synechocystis sp. PCC 6803	50.479	94.277	0.476