Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VKP56_RS05545 Genome accession   NZ_CP142350
Coordinates   1103864..1104826 (-) Length   320 a.a.
NCBI ID   WP_326656612.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain SS1445     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098864..1109826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP56_RS05530 (VKP56_05530) - 1099701..1100408 (-) 708 WP_011017939.1 O-methyltransferase -
  VKP56_RS05535 (VKP56_05535) - 1100474..1101670 (-) 1197 WP_326656611.1 OFA family MFS transporter -
  VKP56_RS05540 (VKP56_05540) pepF 1102046..1103851 (-) 1806 WP_002995768.1 oligoendopeptidase F Regulator
  VKP56_RS05545 (VKP56_05545) coiA 1103864..1104826 (-) 963 WP_326656612.1 competence protein CoiA Machinery gene
  VKP56_RS05550 (VKP56_05550) - 1105121..1105824 (-) 704 Protein_1053 pseudouridine synthase -
  VKP56_RS05555 (VKP56_05555) nagB 1105943..1106647 (-) 705 WP_111684784.1 glucosamine-6-phosphate deaminase -
  VKP56_RS05560 (VKP56_05560) queA 1106849..1107877 (+) 1029 WP_011284937.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  VKP56_RS05565 (VKP56_05565) - 1107884..1109104 (+) 1221 WP_115354066.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37775.21 Da        Isoelectric Point: 10.2848

>NTDB_id=840134 VKP56_RS05545 WP_326656612.1 1103864..1104826(-) (coiA) [Streptococcus pyogenes strain SS1445]
MTKILTALDGKNQLISLVTQPISTKPPFRCPACKSPVRLRQGTIRRPHFAHVQLAHCQFQAENESEEHLTLKAKLYTSLV
RTEAVCIEKYLPELQQIADLWVNDKLALEIQCSPLPVERLKKRTKAYQEKGYPVRWLLGRKLWLNTHLTALQKQFLYFSS
SLGFHLWELDAAANLLRLKYLIHEDLFGKVSYLTKTISLDHNIMEMFRLAYQQEILYSYQKKMTVNLSKRIQRALLARHP
KWLRRQEKAYLSGYNLLMLTTDAFYPQWRPVQSSSGFCQIKGNLRPYYESFKVYYKKEKDKKVQTLFSPKYYVKMDSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=840134 VKP56_RS05545 WP_326656612.1 1103864..1104826(-) (coiA) [Streptococcus pyogenes strain SS1445]
GTGACAAAAATATTAACCGCTTTAGATGGTAAGAATCAGCTCATTTCGCTAGTAACTCAGCCTATTTCAACGAAACCGCC
TTTTCGTTGCCCAGCTTGCAAATCTCCTGTTCGCTTGCGTCAGGGAACAATTAGACGACCTCATTTTGCCCATGTACAAC
TAGCTCATTGTCAATTCCAAGCAGAAAATGAATCTGAGGAACATTTGACGTTGAAGGCAAAACTTTACACCAGTTTAGTC
CGAACAGAAGCTGTCTGTATTGAAAAATATCTTCCTGAGCTGCAACAGATAGCAGACCTTTGGGTGAATGATAAGTTAGC
CTTAGAAATTCAGTGCAGTCCCTTGCCAGTTGAGCGTCTAAAGAAACGCACCAAAGCCTATCAAGAAAAGGGGTATCCGG
TACGATGGTTACTGGGAAGAAAATTGTGGCTTAACACTCACTTAACTGCTTTGCAAAAACAGTTTCTTTACTTTTCATCT
AGTTTGGGCTTTCATTTGTGGGAGCTGGATGCAGCTGCAAATCTGCTACGTCTCAAATATTTAATCCATGAAGACTTATT
TGGTAAGGTAAGTTACCTAACCAAAACCATTTCTTTAGACCATAATATTATGGAAATGTTTCGGTTAGCCTATCAGCAAG
AAATCCTTTATTCTTATCAGAAAAAAATGACTGTGAACCTATCTAAAAGAATACAAAGAGCTCTTTTAGCTAGACACCCG
AAATGGCTACGACGACAAGAAAAGGCTTACTTATCAGGCTATAATTTACTTATGTTAACAACTGATGCTTTTTATCCTCA
ATGGAGACCAGTTCAATCTTCCAGCGGTTTTTGTCAAATTAAAGGAAATCTTCGCCCTTATTATGAAAGTTTTAAAGTCT
ATTACAAAAAAGAAAAGGATAAGAAGGTGCAAACGCTTTTTTCACCAAAATATTATGTTAAAATGGATAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(19-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

42.581

96.875

0.413
  coiA Streptococcus pneumoniae Rx1

41.29

96.875

0.4
  coiA Streptococcus pneumoniae D39

41.29

96.875

0.4
  coiA Streptococcus pneumoniae R6

41.29

96.875

0.4
  coiA Streptococcus pneumoniae TIGR4

41.29

96.875

0.4
  coiA Lactococcus lactis subsp. cremoris KW2

39.024

100

0.4