Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   VRA41_RS03635 Genome accession   NZ_CP142105
Coordinates   676249..676896 (-) Length   215 a.a.
NCBI ID   WP_011227070.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SCB0351     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 671249..681896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VRA41_RS03620 (VRA41_03620) holA 672999..674033 (+) 1035 WP_011227067.1 DNA polymerase III subunit delta -
  VRA41_RS03625 (VRA41_03625) sodA 674128..674733 (+) 606 WP_011680996.1 superoxide dismutase SodA -
  VRA41_RS03630 (VRA41_03630) - 674830..676209 (+) 1380 WP_082302965.1 serine hydrolase -
  VRA41_RS03635 (VRA41_03635) cclA/cilC 676249..676896 (-) 648 WP_011227070.1 prepilin peptidase Machinery gene
  VRA41_RS03640 (VRA41_03640) - 677005..677526 (+) 522 WP_011227071.1 Dps family protein -
  VRA41_RS03645 (VRA41_03645) - 677615..678052 (+) 438 WP_011227072.1 Fur family transcriptional regulator -
  VRA41_RS03650 (VRA41_03650) - 678163..678369 (+) 207 WP_002950395.1 YqgQ family protein -
  VRA41_RS03655 (VRA41_03655) - 678362..679330 (+) 969 WP_011225772.1 ROK family glucokinase -
  VRA41_RS03660 (VRA41_03660) typA 679468..681315 (+) 1848 WP_011227074.1 translational GTPase TypA -
  VRA41_RS03665 (VRA41_03665) - 681339..681611 (+) 273 WP_002950398.1 DUF3165 family protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24826.96 Da        Isoelectric Point: 8.3191

>NTDB_id=839856 VRA41_RS03635 WP_011227070.1 676249..676896(-) (cclA/cilC) [Streptococcus thermophilus strain SCB0351]
MLSILYFFLGTSLGSFIGLICDRFPEKSIIFPRSHCNQCGHPLRFFEMIPILSQLFLRFKCRLCQSSIPYRYLFLELFCG
GILLLCFYDYLDFGRTYLLFFSLCLTIFDLKNKSYPLLIWILGTLPLLCLGNHYLTFSLGISLAVLSYIKRLNIGEGDFL
YLASVSLIFPFSKILIAIELACSFGLMYFLVRKNPNETVAFVPFLFMSVLILTFM

Nucleotide


Download         Length: 648 bp        

>NTDB_id=839856 VRA41_RS03635 WP_011227070.1 676249..676896(-) (cclA/cilC) [Streptococcus thermophilus strain SCB0351]
ATGCTTAGTATTTTATATTTTTTTCTTGGTACCTCTTTAGGCTCGTTTATTGGATTGATTTGTGATCGTTTTCCTGAGAA
GTCGATTATTTTTCCTAGAAGCCATTGCAATCAGTGTGGGCATCCGTTACGTTTTTTCGAAATGATTCCGATCCTATCAC
AACTTTTCTTAAGGTTCAAATGTCGGTTATGTCAAAGCTCTATCCCATACCGTTACCTCTTCTTGGAATTGTTTTGTGGA
GGAATACTTCTTCTTTGTTTCTATGACTACCTAGATTTCGGAAGAACCTATTTGCTTTTTTTCAGTCTTTGTCTAACTAT
TTTTGATTTAAAAAATAAATCATATCCCCTTCTAATTTGGATTCTTGGAACACTACCTCTCCTATGTTTGGGAAACCACT
ACCTCACTTTTAGCTTAGGAATAAGTTTAGCCGTTCTGTCATATATCAAACGTTTAAATATTGGTGAAGGTGATTTTCTC
TATTTGGCCAGTGTCTCCCTCATTTTCCCATTTTCCAAAATACTAATAGCTATTGAACTAGCTTGCTCATTTGGGCTTAT
GTACTTCCTAGTACGTAAAAACCCTAATGAAACAGTCGCTTTTGTCCCATTTCTCTTTATGAGTGTTCTAATTCTTACCT
TCATGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis NCTC 12261

39.252

99.535

0.391
  cclA/cilC Streptococcus mitis SK321

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae TIGR4

39.252

99.535

0.391
  cclA/cilC Streptococcus pneumoniae Rx1

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae D39

38.318

99.535

0.381
  cclA/cilC Streptococcus pneumoniae R6

38.318

99.535

0.381