Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOM10_RS26170 Genome accession   NZ_CP126691
Coordinates   5927089..5927616 (-) Length   175 a.a.
NCBI ID   WP_127929967.1    Uniprot ID   A0A7Z2KY26
Organism   Pseudomonas sp. P108     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5922089..5932616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM10_RS26145 (QOM10_26135) - 5922603..5923253 (+) 651 WP_127929962.1 DUF2491 family protein -
  QOM10_RS26150 (QOM10_26140) - 5923269..5923694 (+) 426 WP_127929963.1 DUF350 domain-containing protein -
  QOM10_RS26155 (QOM10_26145) - 5923712..5924407 (+) 696 WP_316917187.1 DUF1190 domain-containing protein -
  QOM10_RS26160 (QOM10_26150) - 5924410..5925567 (+) 1158 WP_127929965.1 glutathionylspermidine synthase family protein -
  QOM10_RS26165 (QOM10_26155) - 5925642..5926847 (-) 1206 WP_127929966.1 acyltransferase family protein -
  QOM10_RS26170 (QOM10_26160) ssb 5927089..5927616 (-) 528 WP_127929967.1 single-stranded DNA-binding protein Machinery gene
  QOM10_RS26175 (QOM10_26165) - 5927626..5929023 (-) 1398 WP_150751782.1 MFS transporter -
  QOM10_RS26180 (QOM10_26170) uvrA 5929215..5932049 (+) 2835 WP_150751783.1 excinuclease ABC subunit UvrA -
  QOM10_RS26185 (QOM10_26175) bfr 5932113..5932580 (-) 468 WP_053124309.1 bacterioferritin -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19329.47 Da        Isoelectric Point: 5.9314

>NTDB_id=839457 QOM10_RS26170 WP_127929967.1 5927089..5927616(-) (ssb) [Pseudomonas sp. P108]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQSAPSAPRQQAPRPQQSAPQQRSAPAPQQAAP
QPAPDFDSFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=839457 QOM10_RS26170 WP_127929967.1 5927089..5927616(-) (ssb) [Pseudomonas sp. P108]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCCGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTTTCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAGGGTTCGCAGGTTTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACTGAAATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCACAACAGGGCGACCAGCAGGGCGGTGGCAACAACTACCAGCAGTCGGCGCCATCTG
CTCCACGTCAGCAGGCTCCGCGCCCGCAGCAGTCGGCTCCACAGCAGCGTTCGGCTCCGGCTCCACAGCAGGCCGCACCG
CAACCGGCTCCGGATTTCGACAGCTTTGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2KY26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.242

100

0.606
  ssb Glaesserella parasuis strain SC1401

48.691

100

0.531
  ssb Neisseria meningitidis MC58

47.778

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491