Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   QOM10_RS02010 Genome accession   NZ_CP126691
Coordinates   458040..459104 (+) Length   354 a.a.
NCBI ID   WP_127925526.1    Uniprot ID   -
Organism   Pseudomonas sp. P108     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 453040..464104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOM10_RS02000 (QOM10_02000) - 453785..455053 (+) 1269 WP_064117089.1 malic enzyme-like NAD(P)-binding protein -
  QOM10_RS02005 (QOM10_02005) - 455376..457820 (-) 2445 WP_410479216.1 penicillin-binding protein 1A -
  QOM10_RS02010 (QOM10_02010) pilM 458040..459104 (+) 1065 WP_127925526.1 pilus assembly protein PilM Machinery gene
  QOM10_RS02015 (QOM10_02015) - 459104..459670 (+) 567 WP_316917496.1 PilN domain-containing protein -
  QOM10_RS02020 (QOM10_02020) pilO 459667..460290 (+) 624 WP_316917497.1 type 4a pilus biogenesis protein PilO -
  QOM10_RS02025 (QOM10_02025) - 460287..460814 (+) 528 WP_127925529.1 pilus assembly protein PilP -
  QOM10_RS02030 (QOM10_02030) pilQ 460828..462900 (+) 2073 WP_127925530.1 type IV pilus secretin PilQ Machinery gene
  QOM10_RS02035 (QOM10_02035) aroK 462905..463423 (+) 519 WP_045122915.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38106.74 Da        Isoelectric Point: 4.9006

>NTDB_id=839436 QOM10_RS02010 WP_127925526.1 458040..459104(+) (pilM) [Pseudomonas sp. P108]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPANAVVEKNIAELEGVGQALSRVLVKARTGLKGVAV
AVAGSAVITKIIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSPRNPERVNVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLATQLAATQERLTVAVVDIGATMTTLSVLHNGKIIYTREQLFGGRQLTEEIQRRYGLTI
EQAGLAKKQGGLPDDYISEVLQPFREALVQQVSRSLQFFFASGQYNAVDHILLAGGTASVPGLDRLIEQRLKTPTQVANP
FSNMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=839436 QOM10_RS02010 WP_127925526.1 458040..459104(+) (pilM) [Pseudomonas sp. P108]
GTGCTGGGACTCTTCAATAAAAAGGCCAATACGTTACTGGGGATCGACATCAGTTCCACGTCAGTGAAGCTGCTGGAACT
GAGCCGTCAGGGTGATCGCTACCGGGTCGAGGCGTACGCGGTCGAGCCATTGCCGGCAAACGCCGTGGTCGAGAAAAACA
TCGCCGAACTCGAAGGCGTTGGCCAGGCCCTGAGCCGGGTGCTGGTCAAGGCGCGCACCGGGCTCAAGGGCGTGGCAGTC
GCAGTGGCCGGTTCGGCGGTGATTACCAAAATCATCGAAATGGACGCCGGGCTGTCCGATGACGAACTGGAAAACCAGCT
CAAGATCGAGGCCGACCAATACATTCCCTATCCATTGGACGAAGTTGCCATCGATTTCGAAGTCCAGGGCGTTTCGCCGC
GCAACCCTGAACGGGTCAACGTGCTGCTGGCTGCCTGTCGCAAGGAAAACGTCGAAGTCCGTGAAGCGGCGCTGGCACTC
GCCGGGCTGACTGCGCGGGTCGTCGATGTCGAAGCCTATGCGCTGGAACGCTCTTTCGGGCTGCTCGCCACGCAACTGGC
GGCCACGCAAGAGCGGCTCACTGTCGCCGTCGTCGATATCGGCGCGACCATGACCACCCTCAGCGTTCTGCACAACGGCA
AGATCATCTACACCCGCGAGCAATTGTTCGGCGGGCGGCAACTGACCGAAGAAATCCAGCGCCGTTATGGCCTGACCATC
GAGCAGGCGGGGCTGGCGAAAAAGCAGGGCGGTCTGCCCGATGATTACATCAGCGAGGTCTTGCAGCCGTTTCGTGAAGC
GCTGGTACAGCAAGTGTCGCGCTCGTTGCAGTTCTTCTTCGCCTCCGGGCAATACAACGCGGTCGACCACATTCTGCTGG
CCGGCGGTACGGCCTCAGTGCCGGGGCTGGACCGGCTGATCGAGCAGCGCCTGAAGACGCCGACGCAAGTGGCCAATCCG
TTTTCCAATATGGCCTTGAGCAGCAAGGTCAATGCCGGAGCGCTGGCCAGCGACGCGCCGGCCCTGATGATCGCCTGCGG
GCTCGCGCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

56.497

100

0.565
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  comM Acinetobacter baylyi ADP1

55.085

100

0.551
  pilM Legionella pneumophila strain ERS1305867

47.175

100

0.472