Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QPR37_RS01400 Genome accession   NZ_CP126631
Coordinates   265811..266314 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain 33-40     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 248044..270374 265811..266314 within 0


Gene organization within MGE regions


Location: 248044..270374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPR37_RS01265 (QPR37_01265) - 248080..249018 (+) 939 WP_078055966.1 Abi family protein -
  QPR37_RS01270 (QPR37_01270) - 249815..249994 (-) 180 WP_000797954.1 hypothetical protein -
  QPR37_RS01275 (QPR37_01275) - 250010..250522 (-) 513 WP_000813311.1 hypothetical protein -
  QPR37_RS01280 (QPR37_01280) - 250641..250949 (-) 309 WP_254613563.1 pathogenicity island protein -
  QPR37_RS01285 (QPR37_01285) - 251266..251733 (-) 468 WP_141060452.1 hypothetical protein -
  QPR37_RS01290 (QPR37_01290) - 251746..252759 (-) 1014 WP_029625650.1 DUF6731 family protein -
  QPR37_RS13495 - 253010..253099 (-) 90 Protein_239 terminase small subunit -
  QPR37_RS01300 (QPR37_01300) - 253146..253715 (-) 570 WP_001293084.1 terminase small subunit -
  QPR37_RS01305 (QPR37_01305) - 253712..254053 (-) 342 WP_000358778.1 hypothetical protein -
  QPR37_RS01310 (QPR37_01310) - 254056..254583 (-) 528 WP_063650266.1 spore coat protein -
  QPR37_RS01315 (QPR37_01315) - 254634..254852 (-) 219 WP_000853272.1 capsid morphogenesis B protein -
  QPR37_RS01320 (QPR37_01320) - 254870..255448 (-) 579 WP_259378435.1 pathogenicity island protein -
  QPR37_RS01325 (QPR37_01325) - 255460..255801 (-) 342 WP_259378436.1 pathogenicity island protein -
  QPR37_RS01330 (QPR37_01330) - 256337..256978 (-) 642 WP_115056390.1 pathogenicity island protein -
  QPR37_RS01335 (QPR37_01335) - 256975..257355 (-) 381 WP_141060241.1 hypothetical protein -
  QPR37_RS01340 (QPR37_01340) - 257667..259376 (-) 1710 WP_141060242.1 DUF927 domain-containing protein -
  QPR37_RS01345 (QPR37_01345) - 259390..260259 (-) 870 WP_285145962.1 primase alpha helix C-terminal domain-containing protein -
  QPR37_RS01350 (QPR37_01350) - 260325..260642 (-) 318 WP_141060244.1 DUF1474 family protein -
  QPR37_RS01355 (QPR37_01355) - 260643..261026 (-) 384 WP_141060245.1 pathogenicity island protein -
  QPR37_RS01360 (QPR37_01360) - 261028..261231 (-) 204 WP_001231376.1 hypothetical protein -
  QPR37_RS01365 (QPR37_01365) - 261198..261371 (-) 174 WP_000784892.1 hypothetical protein -
  QPR37_RS01370 (QPR37_01370) - 261383..261654 (-) 272 Protein_254 helix-turn-helix domain-containing protein -
  QPR37_RS01375 (QPR37_01375) - 261655..261867 (-) 213 WP_285145964.1 helix-turn-helix transcriptional regulator -
  QPR37_RS01380 (QPR37_01380) - 262012..262707 (+) 696 WP_000668212.1 helix-turn-helix domain-containing protein -
  QPR37_RS01385 (QPR37_01385) - 263163..264377 (+) 1215 Protein_257 site-specific integrase -
  QPR37_RS01390 (QPR37_01390) - 264379..265278 (+) 900 WP_141061945.1 Abi family protein -
  QPR37_RS01395 (QPR37_01395) rpsR 265517..265759 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  QPR37_RS01400 (QPR37_01400) ssbA 265811..266314 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  QPR37_RS01405 (QPR37_01405) rpsF 266335..266631 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  QPR37_RS01410 (QPR37_01410) - 266875..267066 (+) 192 WP_001052483.1 hypothetical protein -
  QPR37_RS01415 (QPR37_01415) ychF 267152..268249 (-) 1098 WP_176429780.1 redox-regulated ATPase YchF -
  QPR37_RS01420 (QPR37_01420) - 268261..268464 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  QPR37_RS01425 (QPR37_01425) - 268494..269375 (-) 882 WP_285145969.1 mechanosensitive ion channel family protein -
  QPR37_RS01430 (QPR37_01430) - 269529..270374 (-) 846 WP_063650645.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=839310 QPR37_RS01400 WP_000934799.1 265811..266314(-) (ssbA) [Staphylococcus aureus strain 33-40]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=839310 QPR37_RS01400 WP_000934799.1 265811..266314(-) (ssbA) [Staphylococcus aureus strain 33-40]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGTGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365