Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QOZ81_RS04575 Genome accession   NZ_CP126625
Coordinates   1039904..1040365 (+) Length   153 a.a.
NCBI ID   WP_291200909.1    Uniprot ID   A0A8J8HM20
Organism   MAG: Geothrix sp. isolate L227-G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1034904..1045365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOZ81_RS04555 (QOZ81_000913) - 1036579..1037367 (-) 789 WP_291200921.1 enoyl-CoA hydratase-related protein -
  QOZ81_RS04560 (QOZ81_000914) - 1037461..1038339 (-) 879 WP_291200918.1 GGDEF domain-containing protein -
  QOZ81_RS04565 (QOZ81_000915) - 1038450..1038902 (-) 453 WP_291200915.1 anti-sigma factor -
  QOZ81_RS04570 (QOZ81_000916) - 1039071..1039805 (-) 735 WP_291200912.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  QOZ81_RS04575 (QOZ81_000917) ssb 1039904..1040365 (+) 462 WP_291200909.1 single-stranded DNA-binding protein Machinery gene
  QOZ81_RS04580 (QOZ81_000918) - 1040558..1040947 (+) 390 WP_291200907.1 BlaI/MecI/CopY family transcriptional regulator -
  QOZ81_RS04585 (QOZ81_000919) - 1040944..1042707 (+) 1764 WP_291200906.1 M56 family metallopeptidase -
  QOZ81_RS04590 (QOZ81_000920) - 1042859..1044484 (+) 1626 WP_291200903.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16833.66 Da        Isoelectric Point: 6.4716

>NTDB_id=839263 QOZ81_RS04575 WP_291200909.1 1039904..1040365(+) (ssb) [MAG: Geothrix sp. isolate L227-G1]
MSGSLNKVLLIGNLGRDPELKSTPSGQTVARFSVATTETWKNQSGEKQSKTEWHNIVVWGKQAEIAEKYLRKGKQVMIEG
RIQYREYTDQAGVKKTACDIRCDNFVMLGRMEDGNRDSGSYGGKNSGGQDFEDHGAPSPAGGNNSFPDDDIPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=839263 QOZ81_RS04575 WP_291200909.1 1039904..1040365(+) (ssb) [MAG: Geothrix sp. isolate L227-G1]
ATGTCCGGATCCTTGAACAAAGTGCTGCTCATCGGCAACCTCGGGCGCGATCCCGAGCTGAAGTCCACCCCTTCGGGGCA
GACCGTCGCCCGCTTCTCCGTGGCCACCACGGAGACCTGGAAGAACCAGAGCGGTGAGAAGCAGAGCAAGACCGAGTGGC
ACAACATCGTGGTGTGGGGCAAGCAGGCCGAGATCGCCGAGAAGTACCTGCGCAAGGGCAAGCAGGTGATGATCGAGGGC
CGCATCCAGTACCGCGAGTACACCGACCAGGCCGGCGTGAAGAAGACCGCCTGCGACATCCGCTGCGACAACTTCGTCAT
GCTGGGCCGCATGGAAGACGGCAACCGCGACTCCGGCAGCTACGGCGGCAAGAACTCCGGTGGCCAGGACTTCGAGGACC
ACGGCGCCCCCAGCCCCGCGGGCGGCAACAACAGCTTCCCGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

42.045

100

0.484
  ssb Neisseria gonorrhoeae MS11

42.045

100

0.484
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.736

100

0.392
  ssb Vibrio cholerae strain A1552

43.182

86.275

0.373