Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   VOI49_RS10170 Genome accession   NZ_CP142018
Coordinates   2024726..2025319 (-) Length   197 a.a.
NCBI ID   WP_226313888.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2019726..2030319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS10140 - 2020121..2020390 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  VOI49_RS10145 spx 2020502..2020900 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  VOI49_RS10150 recA 2021199..2022335 (-) 1137 WP_226313885.1 recombinase RecA Machinery gene
  VOI49_RS10155 cinA 2022393..2023664 (-) 1272 WP_226313886.1 competence/damage-inducible protein A Machinery gene
  VOI49_RS10160 - 2023860..2024144 (-) 285 WP_226313887.1 VOC family protein -
  VOI49_RS10165 - 2024144..2024716 (-) 573 WP_115253192.1 DNA-3-methyladenine glycosylase I -
  VOI49_RS10170 ruvA 2024726..2025319 (-) 594 WP_226313888.1 Holliday junction branch migration protein RuvA Machinery gene
  VOI49_RS10175 - 2025321..2026541 (-) 1221 WP_226313889.1 MDR family MFS transporter -
  VOI49_RS10180 hexB 2026552..2028534 (-) 1983 WP_226313900.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21684.90 Da        Isoelectric Point: 5.3092

>NTDB_id=839236 VOI49_RS10170 WP_226313888.1 2024726..2025319(-) (ruvA) [Streptococcus dysgalactiae strain lu24]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTGSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNQGLVNAIDTSDIKYLTKFPKIGKKTAQQMVLDLAGKFVEVPQETSKAQPSTSSNNDELDEAIEALL
ALGYKATELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=839236 VOI49_RS10170 WP_226313888.1 2024726..2025319(-) (ruvA) [Streptococcus dysgalactiae strain lu24]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACCAATGGACTGGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGGTAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGACGCTCACTTGTTGTTTGGGTTCCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCAGGCATT
GGTCCGACAACAGCTCTCGCTATTGTGGCAGTTGATGATAATCAGGGTCTTGTTAACGCCATTGATACCAGTGACATCAA
ATACCTGACTAAATTTCCTAAAATCGGAAAAAAAACGGCACAACAGATGGTTCTTGACTTAGCAGGAAAATTTGTGGAGG
TTCCACAAGAGACTAGTAAAGCACAACCATCTACCTCCTCAAACAATGACGAGTTGGATGAGGCTATTGAAGCCCTTCTT
GCCCTAGGTTATAAAGCAACAGAACTGAAAAAAATTCGTGCCTTCTTTGAGGGGACCTCTGAGACGGCAGAGCAATACAT
CAAATCAGCATTGAAACTGTTAATGAAAGGGTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

69.036

100

0.69
  ruvA Streptococcus pneumoniae R6

69.036

100

0.69
  ruvA Streptococcus pneumoniae D39

69.036

100

0.69
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.406