Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   VOI49_RS07785 Genome accession   NZ_CP142018
Coordinates   1552270..1552935 (-) Length   221 a.a.
NCBI ID   WP_037585002.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547270..1557935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS07755 - 1548514..1549269 (-) 756 WP_003052128.1 hypothetical protein -
  VOI49_RS07760 - 1549280..1549975 (-) 696 WP_003052130.1 ABC transporter ATP-binding protein -
  VOI49_RS07765 - 1549988..1550176 (-) 189 WP_003052131.1 helix-turn-helix transcriptional regulator -
  VOI49_RS07770 - 1550181..1550528 (-) 348 WP_003052134.1 hypothetical protein -
  VOI49_RS07775 - 1550736..1551687 (+) 952 Protein_1473 IS30 family transposase -
  VOI49_RS07780 hpf 1551642..1552190 (-) 549 WP_003052138.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  VOI49_RS07785 comFC/cflB 1552270..1552935 (-) 666 WP_037585002.1 ComF family protein Machinery gene
  VOI49_RS07790 comFA/cflA 1552907..1554232 (-) 1326 WP_003052142.1 DEAD/DEAH box helicase Machinery gene
  VOI49_RS07795 - 1554288..1554926 (+) 639 WP_003052144.1 YigZ family protein -
  VOI49_RS07800 cysK 1555030..1555965 (+) 936 WP_003052146.1 cysteine synthase A -
  VOI49_RS07805 - 1556116..1556475 (-) 360 WP_003052148.1 S1 RNA-binding domain-containing protein -
  VOI49_RS07810 - 1556475..1557876 (-) 1402 Protein_1480 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25439.42 Da        Isoelectric Point: 8.7015

>NTDB_id=839208 VOI49_RS07785 WP_037585002.1 1552270..1552935(-) (comFC/cflB) [Streptococcus dysgalactiae strain lu24]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKVSFTSCQTCNAPSQSSPCSDCLEWKVKGYEVNHRSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTFSELPAKILIIDDIYTTGNTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=839208 VOI49_RS07785 WP_037585002.1 1552270..1552935(-) (comFC/cflB) [Streptococcus dysgalactiae strain lu24]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGGTAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGAAAGTCAAAGGATACGAGGTTAATCATAGAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCTTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAACACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus mitis SK321

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403