Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   VOI49_RS06890 Genome accession   NZ_CP142018
Coordinates   1369326..1370288 (-) Length   320 a.a.
NCBI ID   WP_115246191.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain lu24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1364326..1375288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VOI49_RS06870 - 1365486..1366106 (-) 621 WP_226313677.1 HAD-IA family hydrolase -
  VOI49_RS06875 - 1366106..1366648 (-) 543 WP_226313676.1 GNAT family N-acetyltransferase -
  VOI49_RS06880 - 1366771..1367325 (-) 555 WP_003051524.1 NADPH-dependent FMN reductase -
  VOI49_RS06885 pepF 1367513..1369315 (-) 1803 WP_003051527.1 oligoendopeptidase F Regulator
  VOI49_RS06890 coiA 1369326..1370288 (-) 963 WP_115246191.1 competence protein CoiA Machinery gene
  VOI49_RS06895 - 1370475..1371625 (-) 1151 Protein_1310 IS3 family transposase -
  VOI49_RS06900 - 1371733..1372893 (-) 1161 WP_226313779.1 MFS transporter -
  VOI49_RS06905 - 1372985..1373701 (-) 717 WP_003051538.1 pseudouridine synthase -
  VOI49_RS06910 nagB 1373805..1374518 (-) 714 WP_003051540.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 37566.91 Da        Isoelectric Point: 10.1798

>NTDB_id=839199 VOI49_RS06890 WP_115246191.1 1369326..1370288(-) (coiA) [Streptococcus dysgalactiae strain lu24]
MLRVLTALTNENQVISLLAQPNPQKQPFRCPACGSPVRLRQGKIIRPHFAHITLANCHFQTENESQEHLHLKAKLYTSLV
KTEKVCVEKYLPELQQFPDLWVNDKLALEIQCSPLPIERLVARTQAYQKNGYEVRWLLGKKLWLKNRLTAFQKQCLYFSS
SLGFHLWELDTAAHLLRLKYLIHEDLFGKVSYLTKTISLDNNIMESLRIPYHQRKLCSYQKPMAKSLSIPIQRALLAKHS
KWLRRQERAYLAGYNLLMLPVEAFYPQWRPVQSATGFCQIKENLHDYDKSFKAYYKKEGNKKVQTLFSPQYYVKIVSNRK

Nucleotide


Download         Length: 963 bp        

>NTDB_id=839199 VOI49_RS06890 WP_115246191.1 1369326..1370288(-) (coiA) [Streptococcus dysgalactiae strain lu24]
GTGTTGAGAGTATTAACAGCTTTAACCAATGAGAATCAGGTGATTTCTTTGCTAGCACAGCCTAATCCTCAGAAGCAACC
ATTTCGTTGTCCAGCTTGTGGATCCCCTGTTCGCTTGCGTCAGGGAAAAATTATACGCCCTCATTTTGCACACATCACAT
TAGCTAATTGTCATTTTCAAACAGAAAATGAGTCCCAAGAACATTTGCATTTGAAAGCAAAATTATATACAAGCCTGGTA
AAGACAGAAAAGGTTTGTGTGGAAAAGTATCTTCCTGAGTTACAACAATTTCCAGACCTTTGGGTGAATGATAAATTAGC
CTTAGAAATTCAGTGCAGCCCTTTACCAATTGAGCGTTTGGTGGCACGTACACAAGCCTATCAGAAAAATGGTTACGAGG
TTCGTTGGCTGTTGGGAAAGAAACTTTGGCTTAAAAATCGTTTAACGGCCTTCCAAAAACAATGTCTTTACTTTTCGTCT
AGTTTAGGCTTTCATTTGTGGGAGTTGGATACAGCTGCACATCTGTTACGTCTAAAATACTTAATTCATGAAGATTTATT
TGGCAAAGTGAGTTACCTAACCAAAACCATTTCTTTGGATAACAATATCATGGAAAGTTTGCGGATTCCTTATCACCAAA
GGAAGCTCTGTTCTTACCAAAAACCTATGGCCAAATCTCTTTCGATACCCATTCAAAGGGCTTTATTAGCGAAGCATTCT
AAATGGTTACGTCGTCAGGAAAGAGCCTATTTAGCTGGCTATAATTTACTCATGTTGCCAGTAGAGGCCTTCTATCCTCA
ATGGCGCCCCGTACAGTCGGCTACTGGTTTTTGTCAAATCAAAGAGAATCTCCATGATTATGATAAGAGTTTTAAAGCTT
ATTACAAAAAAGAAGGGAATAAAAAGGTGCAAACGCTTTTTTCGCCTCAATATTATGTTAAAATAGTTAGTAATAGAAAA
TGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(9-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.226

96.875

0.419
  coiA Streptococcus pneumoniae Rx1

41.935

96.875

0.406
  coiA Streptococcus pneumoniae D39

41.935

96.875

0.406
  coiA Streptococcus pneumoniae R6

41.935

96.875

0.406
  coiA Streptococcus pneumoniae TIGR4

41.935

96.875

0.406
  coiA Lactococcus lactis subsp. cremoris KW2

38.344

100

0.391