Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QPK06_RS06945 Genome accession   NZ_CP126578
Coordinates   1470072..1470659 (+) Length   195 a.a.
NCBI ID   WP_124928423.1    Uniprot ID   -
Organism   Aeromonas veronii strain AV066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1470875..1487235 1470072..1470659 flank 216


Gene organization within MGE regions


Location: 1470072..1487235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK06_RS06945 (QPK06_06945) ssb 1470072..1470659 (+) 588 WP_124928423.1 single-stranded DNA-binding protein Machinery gene
  QPK06_RS06950 (QPK06_06950) - 1470818..1472065 (+) 1248 WP_103251923.1 site-specific integrase -
  QPK06_RS06955 (QPK06_06955) - 1472052..1473614 (+) 1563 WP_219728841.1 site-specific integrase -
  QPK06_RS06960 (QPK06_06960) - 1473607..1475640 (+) 2034 WP_103251924.1 integrase -
  QPK06_RS06965 (QPK06_06965) - 1475633..1476052 (+) 420 WP_180993766.1 hypothetical protein -
  QPK06_RS06970 (QPK06_06970) - 1476178..1476819 (-) 642 WP_103251926.1 hypothetical protein -
  QPK06_RS06975 (QPK06_06975) - 1476916..1477563 (+) 648 WP_103251927.1 metallophosphoesterase -
  QPK06_RS06980 (QPK06_06980) - 1477939..1479195 (+) 1257 WP_219728842.1 SIR2 family protein -
  QPK06_RS06985 (QPK06_06985) - 1479192..1481018 (+) 1827 WP_103251929.1 ATP-binding protein -
  QPK06_RS06990 (QPK06_06990) - 1481021..1481233 (+) 213 WP_103251930.1 KTSC domain-containing protein -
  QPK06_RS06995 (QPK06_06995) - 1481372..1485793 (+) 4422 WP_103251931.1 ATP-binding protein -
  QPK06_RS07000 (QPK06_07000) - 1485859..1487235 (+) 1377 WP_219728843.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21565.08 Da        Isoelectric Point: 5.9301

>NTDB_id=838920 QPK06_RS06945 WP_124928423.1 1470072..1470659(+) (ssb) [Aeromonas veronii strain AV066]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NIQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=838920 QPK06_RS06945 WP_124928423.1 1470072..1470659(+) (ssb) [Aeromonas veronii strain AV066]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCCACCTCTGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGCACCG
AGTGGCACCGCGTCGTCTTCATGGGCAAGTTGGCCGAAGTGGCTGGCGAATACCTGAAGAAAGGCTCCCAGGTTTATGTC
GAAGGCAAACTGCAGACTCGCAAGTGGCAAGATCAGAGTGGCCAGGAACGCTACACCACTGAAGTGCTGGTCGACAGCTT
TACCGGCGTAATGCAGATGCTGGGTGGCCGTCCGCAAGGCGGTCAGGGCATGGGCCAGAACATGGGCGGCCAATCCCAAG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCACCTGCTCCGCAGCAG
AACATTCAACCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

53.886

98.974

0.533
  ssb Neisseria meningitidis MC58

46.597

97.949

0.456
  ssb Neisseria gonorrhoeae MS11

46.842

97.436

0.456